Detailed information of TA system TA106342

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yefM-yoeB (relBE)/Txe-RelB
• Location: 2705800..2706323
• Replicon: chromosome
• Accession: NZ_CP029681
• Organism: Staphylococcus aureus strain AR_0473

Toxin (Protein)

• Gene name: yoeB
• Uniprot ID: T1YCD0
• Locus tag: CSC58_RS14065
• Protein ID: WP_000074043.1
• Coordinates: 2706057..2706323 (+)
• Length: 89 a.a.

Antitoxin (Protein)

• Gene name: yefM
• Uniprot ID: T1YBB2
• Locus tag: CSC58_RS14060
• Protein ID: WP_000587618.1
• Coordinates: 2705800..2706057 (+)
• Length: 86 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CSC58_RS14040	2702296..2703045	-	750	WP_000072441.1	hypothetical protein	-
CSC58_RS14045	2703240..2704817	+	1578	WP_110184798.1	FMN-binding glutamate synthase family protein	-
CSC58_RS14050	2704985..2705440	-	456	WP_110179772.1	DUF1307 domain-containing protein	-
CSC58_RS14060	2705800..2706057	+	258	WP_000587618.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
CSC58_RS14065	2706057..2706323	+	267	WP_000074043.1	Txe/YoeB family addiction module toxin	Toxin
CSC58_RS14070	2706679..2707755	+	1077	WP_001076665.1	M42 family metallopeptidase	-
CSC58_RS14075	2708004..2708666	+	663	WP_000923524.1	ATP-binding cassette domain-containing protein	-
CSC58_RS14080	2708659..2709435	+	777	WP_000072147.1	iron export ABC transporter permease subunit FetB	-
CSC58_RS14085	2709831..2711018	+	1188	WP_000026187.1	MFS transporter	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin YoeB (4-87)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (1-68)

Sequences

Toxin

Protein

• Length: 89 a.a.
• Molecular weight: 10657.45 Da
• Isoelectric Point: 10.3584

>T106342 WP_000074043.1 NZ_CP029681:2706057-2706323 [Staphylococcus aureus]
MSNYTVKIKNSAKLDLKKIKHPYLKKTFIEIVETLKNNPYKITQSFEKLEPKYLERYSRRINLQHRVVYTIDDRNKVVLI
LSAWSHYD

Nucleotide

• Length: 267 bp

>T106342 NZ_CP029681:2706057-2706323 [Staphylococcus aureus]
ATGAGCAATTACACGGTTAAGATTAAAAATTCGGCGAAGTTAGATTTAAAGAAAATAAAACATCCTTATTTAAAGAAGAC
ATTTATAGAAATTGTTGAGACTTTAAAAAATAATCCTTATAAAATAACACAATCCTTTGAAAAATTAGAACCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCTTCAGCACAGGGTCGTCTATACCATAGATGATCGAAATAAAGTAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin

Protein

• Length: 86 a.a.
• Molecular weight: 9762.78 Da
• Isoelectric Point: 4.1958

>AT106342 WP_000587618.1 NZ_CP029681:2705800-2706057 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETMYLVSTGTMDKVREREKDNSGTTNIDDI
DWDNL

Nucleotide

• Length: 258 bp

>AT106342 NZ_CP029681:2705800-2706057 [Staphylococcus aureus]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGTAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATGT
ATCTTGTATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAATAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTTTAA

Structures

Toxin

• AlphaFold DB: T1YCD0

Antitoxin

• AlphaFold DB: T1YBB2