Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 165933..166450 Replicon chromosome
Accession NZ_CP029664
Organism Staphylococcus aureus strain AR_0226

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag CSB82_RS00890 Protein ID WP_000113262.1
Coordinates 166184..166450 (+) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A5A8VWS3
Locus tag CSB82_RS00885 Protein ID WP_000584502.1
Coordinates 165933..166184 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CSB82_RS00855 161634..162353 + 720 WP_000479576.1 amino acid ABC transporter permease -
CSB82_RS00860 162350..163081 + 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
CSB82_RS00865 163178..164428 - 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
CSB82_RS00870 164683..165042 + 360 WP_000819847.1 DUF4467 domain-containing protein -
CSB82_RS00875 165061..165660 + 600 WP_000162813.1 DsbA family protein -
CSB82_RS00880 165667..165768 + 102 WP_001791744.1 hypothetical protein -
CSB82_RS00885 165933..166184 + 252 WP_000584502.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
CSB82_RS00890 166184..166450 + 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
CSB82_RS00895 166485..166556 + 72 Protein_163 hypothetical protein -
CSB82_RS00900 166745..168295 + 1551 WP_000727762.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
CSB82_RS00905 168481..168948 + 468 WP_000153344.1 SRPBCC domain-containing protein -
CSB82_RS00910 169032..169214 + 183 WP_000230294.1 hypothetical protein -
CSB82_RS00915 169431..170255 + 825 WP_000572040.1 formate/nitrite transporter family protein -
CSB82_RS00920 170488..171024 + 537 WP_000169317.1 GNAT family N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T106187 WP_000113262.1 NZ_CP029664:166184-166450 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T106187 NZ_CP029664:166184-166450 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9417.65 Da        Isoelectric Point: 4.4702

>AT106187 WP_000584502.1 NZ_CP029664:165933-166184 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSVMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT106187 NZ_CP029664:165933-166184 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGTTATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
AlphaFold DB A0A5A8VWS3

References