Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2680129..2680652 Replicon chromosome
Accession NZ_CP029653
Organism Staphylococcus aureus strain AR_0470

Toxin (Protein)


Gene name yoeB Uniprot ID A0A2W3LFI1
Locus tag CSC55_RS13880 Protein ID WP_000074047.1
Coordinates 2680129..2680395 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A2S6D1W5
Locus tag CSC55_RS13885 Protein ID WP_000587617.1
Coordinates 2680395..2680652 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CSC55_RS13860 2675339..2676526 - 1188 WP_000026190.1 MFS transporter -
CSC55_RS13865 2676920..2677696 - 777 WP_000072154.1 iron export ABC transporter permease subunit FetB -
CSC55_RS13870 2677689..2678351 - 663 WP_000923514.1 ATP-binding cassette domain-containing protein -
CSC55_RS13875 2678697..2679773 - 1077 WP_001076679.1 M42 family metallopeptidase -
CSC55_RS13880 2680129..2680395 - 267 WP_000074047.1 Txe/YoeB family addiction module toxin Toxin
CSC55_RS13885 2680395..2680652 - 258 WP_000587617.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
CSC55_RS13895 2681012..2681467 + 456 WP_000732090.1 YehR family lipoprotein -
CSC55_RS13900 2681635..2683212 - 1578 WP_000143489.1 FMN-binding glutamate synthase family protein -
CSC55_RS13905 2683408..2684157 + 750 WP_000072447.1 CPBP family intramembrane metalloprotease -
CSC55_RS13910 2684381..2685574 - 1194 WP_000675407.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(4-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10662.26 Da        Isoelectric Point: 10.1384

>T106109 WP_000074047.1 NZ_CP029653:c2680395-2680129 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRIVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T106109 NZ_CP029653:c2680395-2680129 [Staphylococcus aureus]
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAAGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCCTTTGAAAAATTAGAACCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGATCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9747.71 Da        Isoelectric Point: 4.1353

>AT106109 WP_000587617.1 NZ_CP029653:c2680652-2680395 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDSSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT106109 NZ_CP029653:c2680652-2680395 [Staphylococcus aureus]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAGTAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2W3LFI1

Antitoxin

Source ID Structure
AlphaFold DB A0A2S6D1W5

References