Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 1343594..1344099 Replicon chromosome
Accession NZ_CP029642
Organism Arthrobacter dokdonellae isolate rhizosphere

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag DMB86_RS05985 Protein ID WP_113716981.1
Coordinates 1343842..1344099 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag DMB86_RS05980 Protein ID WP_113716980.1
Coordinates 1343594..1343845 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DMB86_RS05960 1339759..1339956 - 198 WP_193926266.1 hypothetical protein -
DMB86_RS05965 1340240..1340623 - 384 WP_113716977.1 hypothetical protein -
DMB86_RS05970 1341501..1342967 + 1467 WP_113716978.1 family 20 glycosylhydrolase -
DMB86_RS05975 1343054..1343491 + 438 WP_113716979.1 VOC family protein -
DMB86_RS05980 1343594..1343845 + 252 WP_113716980.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
DMB86_RS05985 1343842..1344099 + 258 WP_113716981.1 Txe/YoeB family addiction module toxin Toxin
DMB86_RS05990 1344144..1344794 - 651 WP_113716982.1 hypothetical protein -
DMB86_RS05995 1345235..1346347 + 1113 WP_113716983.1 Fic family protein -
DMB86_RS06000 1346399..1346881 - 483 WP_113716984.1 hypothetical protein -
DMB86_RS06005 1347064..1348728 - 1665 WP_113716985.1 NERD domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 1335092..1362749 27657


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10332.68 Da        Isoelectric Point: 8.0383

>T106058 WP_113716981.1 NZ_CP029642:1343842-1344099 [Arthrobacter dokdonellae]
MKLVWDEQAWEEYVGWQRDDKRILKRINDLLKDITRNGNEGIGKPEPLKHGFSGYWSRRITDEHRLIYRIAGDEVRIAQC
RYHYE

Download         Length: 258 bp

>T106058 NZ_CP029642:1343842-1344099 [Arthrobacter dokdonellae]
ATGAAGCTTGTTTGGGACGAACAGGCTTGGGAGGAATATGTCGGATGGCAGCGTGACGACAAGCGGATCCTCAAAAGGAT
CAATGACTTGCTCAAAGACATCACGCGGAACGGCAACGAAGGCATCGGCAAGCCGGAGCCGCTCAAGCACGGTTTTAGTG
GCTACTGGTCGCGCCGCATAACTGATGAACACCGGCTGATATACCGGATTGCTGGCGATGAGGTCCGTATTGCCCAGTGC
CGCTACCACTACGAATAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9131.30 Da        Isoelectric Point: 4.7769

>AT106058 WP_113716980.1 NZ_CP029642:1343594-1343845 [Arthrobacter dokdonellae]
MKTMSYSESRAHYAATLDAVVDDSEEVVITRAGREPVVIVSLAEYQSLKETAYLLRSPANARRLLSAIDRLENGAGVEHD
LLP

Download         Length: 252 bp

>AT106058 NZ_CP029642:1343594-1343845 [Arthrobacter dokdonellae]
ATGAAAACGATGAGTTATTCAGAATCACGGGCACACTATGCCGCCACACTTGACGCCGTCGTCGATGACAGCGAAGAAGT
GGTCATTACACGTGCCGGCCGGGAGCCTGTGGTCATCGTGTCGCTGGCTGAATACCAGTCGCTCAAGGAAACGGCATATC
TGTTGCGAAGCCCGGCAAACGCCCGCCGCCTCTTGAGTGCAATTGATCGCTTGGAGAACGGCGCCGGCGTCGAGCACGAC
TTGCTTCCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References