Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2571237..2571754 Replicon chromosome
Accession NZ_CP029166
Organism Staphylococcus aureus strain SVH7513

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag DD555_RS13635 Protein ID WP_000113262.1
Coordinates 2571237..2571503 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag DD555_RS13640 Protein ID WP_000584499.1
Coordinates 2571503..2571754 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DD555_RS13605 2566660..2567196 - 537 WP_000169317.1 GNAT family N-acetyltransferase -
DD555_RS13610 2567429..2568253 - 825 WP_000572040.1 formate/nitrite transporter family protein -
DD555_RS13615 2568470..2568652 - 183 WP_000230294.1 hypothetical protein -
DD555_RS13620 2568736..2569203 - 468 WP_000153344.1 SRPBCC domain-containing protein -
DD555_RS13625 2569389..2570942 - 1554 WP_000727767.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
DD555_RS13630 2571131..2571202 - 72 Protein_2510 hypothetical protein -
DD555_RS13635 2571237..2571503 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
DD555_RS13640 2571503..2571754 - 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
DD555_RS13645 2571919..2572020 - 102 WP_001791744.1 hypothetical protein -
DD555_RS13650 2572027..2572626 - 600 WP_000162813.1 DsbA family protein -
DD555_RS13655 2572645..2573007 - 363 WP_000819843.1 DUF4467 domain-containing protein -
DD555_RS13660 2573262..2574512 + 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
DD555_RS13665 2574609..2575340 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
DD555_RS13670 2575337..2576056 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T105126 WP_000113262.1 NZ_CP029166:c2571503-2571237 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T105126 NZ_CP029166:c2571503-2571237 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT105126 WP_000584499.1 NZ_CP029166:c2571754-2571503 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT105126 NZ_CP029166:c2571754-2571503 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7BWF
PDB 6L8E
AlphaFold DB T1YB60

References