Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | ldrD-rdlD/Ldr(toxin) |
Location | 230353..230575 | Replicon | chromosome |
Accession | NZ_CP028734 | ||
Organism | Escherichia coli strain A42 |
Toxin (Protein)
Gene name | ldrD | Uniprot ID | S1NWX0 |
Locus tag | AOY95_RS01085 | Protein ID | WP_001295224.1 |
Coordinates | 230468..230575 (+) | Length | 36 a.a. |
Antitoxin (RNA)
Gene name | rdlD | ||
Locus tag | - | ||
Coordinates | 230353..230419 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
AOY95_RS01060 | 225741..226724 | + | 984 | WP_001196477.1 | dipeptide ABC transporter ATP-binding protein | - |
AOY95_RS01065 | 226721..227725 | + | 1005 | WP_001525880.1 | dipeptide ABC transporter ATP-binding subunit DppF | - |
AOY95_RS01070 | 227755..229026 | - | 1272 | WP_001525879.1 | aromatic amino acid transport family protein | - |
AOY95_RS01075 | 229502..229609 | + | 108 | WP_001295224.1 | type I toxin-antitoxin system toxin Ldr family protein | - |
AOY95_RS01080 | 229985..230092 | + | 108 | WP_000170748.1 | type I toxin-antitoxin system toxin Ldr family protein | - |
- | 230353..230419 | - | 67 | - | - | Antitoxin |
AOY95_RS01085 | 230468..230575 | + | 108 | WP_001295224.1 | type I toxin-antitoxin system toxin Ldr family protein | Toxin |
AOY95_RS01090 | 230661..232340 | - | 1680 | WP_022296260.1 | cellulose biosynthesis protein BcsG | - |
AOY95_RS01095 | 232337..232528 | - | 192 | WP_000988308.1 | cellulose biosynthesis protein BcsF | - |
AOY95_RS01100 | 232525..234096 | - | 1572 | WP_001204941.1 | cellulose biosynthesis c-di-GMP-binding protein BcsE | - |
AOY95_RS01105 | 234369..234557 | + | 189 | WP_001525878.1 | cellulose biosynthesis protein BcsR | - |
AOY95_RS01110 | 234569..235321 | + | 753 | WP_000279528.1 | cellulose biosynthesis protein BcsQ | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 36 a.a. Molecular weight: 3882.70 Da Isoelectric Point: 9.0157
>T103151 WP_001295224.1 NZ_CP028734:230468-230575 [Escherichia coli]
MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK
MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK
Download Length: 108 bp
>T103151 NZ_CP028734:230468-230575 [Escherichia coli]
ATGACGCTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA
ATGACGCTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA
Antitoxin
Download Length: 67 bp
>AT103151 NZ_CP028734:c230419-230353 [Escherichia coli]
GTCTAGATGCAAGAATGGCCCCCGTGATGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTC
GTCTAGATGCAAGAATGGCCCCCGTGATGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTC
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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