Detailed information of TA system TA102670

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): symER/SymE(toxin)
• Location: 4760245..4760657
• Replicon: chromosome
• Accession: NZ_CP028680
• Organism: Escherichia coli strain 113

Toxin (Protein)

• Gene name: symE
• Uniprot ID: Q8FA88
• Locus tag: C9E42_RS24500
• Protein ID: WP_000132630.1
• Coordinates: 4760316..4760657 (+)
• Length: 114 a.a.

Antitoxin (RNA)

Gene name	symR
Locus tag	-
Coordinates	4760245..4760321 (-)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C9E42_RS24490	4756872..4758341	+	1470	WP_001302468.1	type I restriction-modification system subunit M	-
C9E42_RS24495	4758341..4760095	+	1755	WP_000110082.1	restriction endonuclease subunit S	-
-	4760245..4760321	-	77	NuclAT_14	-	Antitoxin
-	4760245..4760321	-	77	NuclAT_14	-	Antitoxin
-	4760245..4760321	-	77	NuclAT_14	-	Antitoxin
-	4760245..4760321	-	77	NuclAT_14	-	Antitoxin
-	4760245..4760321	-	77	NuclAT_15	-	Antitoxin
-	4760245..4760321	-	77	NuclAT_15	-	Antitoxin
-	4760245..4760321	-	77	NuclAT_15	-	Antitoxin
-	4760245..4760321	-	77	NuclAT_15	-	Antitoxin
C9E42_RS24500	4760316..4760657	+	342	WP_000132630.1	endoribonuclease SymE	Toxin
C9E42_RS24505	4760704..4761867	-	1164	WP_001304006.1	DUF1524 domain-containing protein	-
C9E42_RS24510	4761915..4762796	-	882	WP_001304007.1	DUF262 domain-containing protein	-
C9E42_RS24515	4762893..4763057	-	165	WP_000394274.1	DUF1127 domain-containing protein	-
C9E42_RS24520	4763234..4764646	+	1413	WP_000199295.1	PLP-dependent aminotransferase family protein	-
C9E42_RS28535	4764889..4765089	-	201	WP_001310455.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_002655 Escherichia coli O157:H7 str. EDL933 5456776..5475497 0.003 View NC_002695 Escherichia coli O157:H7 str. Sakai 5426911..5445631 0.003	inside	Genomic island	-	espX6	4752444..4773662	21218

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin SymE-like (20-71)

Sequences

Toxin

Protein

• Length: 114 a.a.
• Molecular weight: 12294.13 Da
• Isoelectric Point: 8.4982

>T102670 WP_000132630.1 NZ_CP028680:4760316-4760657 [Escherichia coli]
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA

Nucleotide

• Length: 342 bp

>T102670 NZ_CP028680:4760316-4760657 [Escherichia coli]
ATGACTGATACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGTCGTTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACGGTGGTAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGCCGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAGGCAGGTGCAGGAGTTTATTGGGGTGATTGC
GGGTAAACAGAAAGTTGCCTGA

Antitoxin

Nucleotide

• Length: 77 bp

>AT102670 NZ_CP028680:c4760321-4760245 [Escherichia coli]
AGTCATAACTGCTATTCCCTATAAATAGTGATTGTGATTAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Structures

Toxin

• AlphaFold DB: A0A0E0Y5T0

Antitoxin