Detailed information of TA system TA102662

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): hok-sok/-
• Location: 3460905..3461130
• Replicon: chromosome
• Accession: NZ_CP028680
• Organism: Escherichia coli strain 113

Toxin (Protein)

• Gene name: hokW
• Uniprot ID: -
• Locus tag: C9E42_RS18170
• Protein ID: WP_000813263.1
• Coordinates: 3460905..3461060 (-)
• Length: 52 a.a.

Antitoxin (RNA)

Gene name	sokW
Locus tag	-
Coordinates	3461072..3461130 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C9E42_RS18135	3456359..3457072	-	714	WP_000261909.1	helix-turn-helix domain-containing protein	-
C9E42_RS18140	3457210..3457406	-	197	Protein_3451	TrmB family transcriptional regulator	-
C9E42_RS18145	3457693..3458511	-	819	WP_000265265.1	CPBP family intramembrane metalloprotease	-
C9E42_RS18150	3458663..3459034	-	372	WP_000090264.1	antitermination protein	-
C9E42_RS18155	3459024..3459395	-	372	WP_001217436.1	RusA family crossover junction endodeoxyribonuclease	-
C9E42_RS18160	3459408..3460457	-	1050	WP_001265172.1	DUF968 domain-containing protein	-
C9E42_RS18165	3460459..3460737	-	279	WP_001341388.1	hypothetical protein	-
C9E42_RS18170	3460905..3461060	-	156	WP_000813263.1	type I toxin-antitoxin system toxin HokD	Toxin
-	3461072..3461130	+	59	-	-	Antitoxin
C9E42_RS18190	3461665..3462438	+	774	WP_000160654.1	alpha/beta hydrolase	-
C9E42_RS18195	3462790..3463203	-	414	WP_001151233.1	DUF977 family protein	-
C9E42_RS18200	3463219..3463989	-	771	WP_000450992.1	DUF1627 domain-containing protein	-
C9E42_RS18205	3464011..3464757	-	747	WP_000788751.1	ATP-binding protein	-
C9E42_RS18210	3464764..3465855	-	1092	WP_001205823.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Hok/gef cell toxic protein (6-47)

Sequences

Toxin

Protein

• Length: 52 a.a.
• Molecular weight: 5722.86 Da
• Isoelectric Point: 6.1531

>T102662 WP_000813263.1 NZ_CP028680:c3461060-3460905 [Escherichia coli]
MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRVRTGQTEVAVFTAYEPEE

Nucleotide

• Length: 156 bp

>T102662 NZ_CP028680:c3461060-3460905 [Escherichia coli]
ATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATAGTGACGGCACTGGTAACGAGGAA
AGACCTCTGCGAGGTACGAGTCCGAACCGGCCAGACGGAGGTCGCTGTCTTCACAGCTTACGAACCTGAGGAGTAA

Antitoxin

Nucleotide

• Length: 59 bp

>AT102662 NZ_CP028680:3461072-3461130 [Escherichia coli]
CCTTGCCTTTCGGCACGTAAGAGGCTAACCTAGATTTGCCGTTCATAGATTGAGCCTCA

Structures

Antitoxin