Detailed information of TA system TA102632

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): DinJ-YafQ (relBE)/YafQ-RelB
• Location: 4381795..4382334
• Replicon: chromosome
• Accession: NZ_CP028677
• Organism: Escherichia coli strain 114

Toxin (Protein)

• Gene name: yafQ
• Uniprot ID: -
• Locus tag: C9E43_RS22660
• Protein ID: WP_001303998.1
• Coordinates: 4382074..4382334 (+)
• Length: 87 a.a.

Antitoxin (Protein)

• Gene name: dinJ
• Uniprot ID: C3TP07
• Locus tag: C9E43_RS22655
• Protein ID: WP_000729705.1
• Coordinates: 4381795..4382055 (+)
• Length: 87 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C9E43_RS22635	4377549..4378334	-	786	WP_000207556.1	putative lateral flagellar export/assembly protein LafU	-
C9E43_RS22640	4378306..4380018	+	1713	Protein_4306	flagellar biosynthesis protein FlhA	-
C9E43_RS22645	4380163..4380660	-	498	Protein_4307	REP-associated tyrosine transposase RayT	-
C9E43_RS22650	4380836..4381609	-	774	WP_000543891.1	C40 family peptidase	-
C9E43_RS22655	4381795..4382055	+	261	WP_000729705.1	type II toxin-antitoxin system antitoxin DinJ	Antitoxin
C9E43_RS22660	4382074..4382334	+	261	WP_001303998.1	type II toxin-antitoxin system mRNA interferase toxin YafQ	Toxin
C9E43_RS22665	4382490..4383230	+	741	WP_001225679.1	murein L,D-transpeptidase	-
C9E43_RS22670	4383201..4383968	-	768	WP_001301698.1	class II glutamine amidotransferase	-
C9E43_RS22675	4384073..4384651	-	579	WP_000284050.1	D-sedoheptulose 7-phosphate isomerase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, YafQ-like toxin (3-85)

Antitoxin

• RelB antitoxin/Antitoxin DinJ (1-85)

Sequences

Toxin

Protein

• Length: 87 a.a.
• Molecular weight: 10026.71 Da
• Isoelectric Point: 10.3188

>T102632 WP_001303998.1 NZ_CP028677:4382074-4382334 [Escherichia coli]
MNSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGT
HAALFG

Nucleotide

• Length: 261 bp

>T102632 NZ_CP028677:4382074-4382334 [Escherichia coli]
TTGAACTCGGGACAATTTTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAATAAATTGAAATATCTTAT
GACGCTTCTTATCAATAATACTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAGGTTCATGGAAAGGTTATC
GCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGATTTGAGAGAACTGGAACT
CACGCGGCGCTCTTTGGGTAA

Antitoxin

Protein

• Length: 87 a.a.
• Molecular weight: 9377.74 Da
• Isoelectric Point: 5.0758

>AT102632 WP_000729705.1 NZ_CP028677:4381795-4382055 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVDVHKAKDADDL
FDKLGV

Nucleotide

• Length: 261 bp

>AT102632 NZ_CP028677:4381795-4382055 [Escherichia coli]
ATGGCTGCTAACGCATTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCGGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCGTTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAGTTTAA