Detailed information of TA system
Overview
TA module
| Type | I | Classification (family/domain) | /- |
| Location | 2504847..2505101 | Replicon | chromosome |
| Accession | NC_003923 | ||
| Organism | Staphylococcus aureus subsp. aureus MW2 | ||
Toxin (Protein)
| Gene name | fst | Uniprot ID | - |
| Locus tag | - | Protein ID | - |
| Coordinates | 2504847..2505101 (+) | Length | 85 a.a. |
Antitoxin (RNA)
| Gene name | - | ||
| Locus tag | - | ||
| Coordinates | - () |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MW_RS12735 | 2500240..2500407 | - | 168 | WP_001793334.1 | hypothetical protein | - |
| MW_RS12745 (MW2351) | 2500638..2502371 | - | 1734 | WP_000486494.1 | ABC transporter ATP-binding protein/permease | - |
| MW_RS12750 (MW2352) | 2502396..2504159 | - | 1764 | WP_001064815.1 | ABC transporter ATP-binding protein/permease | - |
| MW_RS12760 | 2504843..2504950 | - | 108 | WP_000482647.1 | type I toxin-antitoxin system Fst family toxin | - |
| MW_RS12765 (MW2355) | 2505084..2505470 | - | 387 | WP_000779360.1 | flippase GtxA | - |
| MW_RS12770 (MW2356) | 2505728..2506870 | + | 1143 | WP_001176871.1 | glycerate kinase | - |
| MW_RS12775 (MW2357) | 2506930..2507589 | + | 660 | WP_000831301.1 | membrane protein | - |
| MW_RS12780 (MW2358) | 2507771..2508982 | + | 1212 | WP_001192075.1 | multidrug effflux MFS transporter | - |
| MW_RS12785 (MW2359) | 2509105..2509578 | - | 474 | WP_000456497.1 | GyrI-like domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 9837.93 Da Isoelectric Point: 10.9082
>T10155 - NC_003923:2504847-2505101 [Staphylococcus aureus subsp. aureus MW2]
MSPFLLLRVRNQCAKNATRQPLKAEVMMSINKLNIRHTPPLCVKVTPEMLGDHYIISFIYYISRNIKVRVKRFLVVYATL
ITIF
MSPFLLLRVRNQCAKNATRQPLKAEVMMSINKLNIRHTPPLCVKVTPEMLGDHYIISFIYYISRNIKVRVKRFLVVYATL
ITIF
Download Length: 255 bp
>T10155 NC_003923:2504847-2505101 [Staphylococcus aureus subsp. aureus MW2]
TTGTCACCTTTTTTATTGTTGCGCGTTCGTAACCAATGTGCAAAAAACGCAACAAGACAGCCGCTTAAAGCTGAAGTCAT
GATGTCAATTAATAAATTGAACATCCGTCATACACCTCCTCTCTGCGTTAAAGTAACGCCCGAGATGTTAGGCGACCATT
ATATTATATCATTTATTTATTATATTTCACGCAATATTAAAGTTCGAGTAAAGCGTTTTTTAGTGGTTTACGCTACTTTA
ATTACTATCTTTTAA
TTGTCACCTTTTTTATTGTTGCGCGTTCGTAACCAATGTGCAAAAAACGCAACAAGACAGCCGCTTAAAGCTGAAGTCAT
GATGTCAATTAATAAATTGAACATCCGTCATACACCTCCTCTCTGCGTTAAAGTAACGCCCGAGATGTTAGGCGACCATT
ATATTATATCATTTATTTATTATATTTCACGCAATATTAAAGTTCGAGTAAAGCGTTTTTTAGTGGTTTACGCTACTTTA
ATTACTATCTTTTAA
Antitoxin
Download Length: 1 bp
>AT10155 UFRD01000002:c4600708-4600427 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGCCTCAGATAGCTATAGAATCTAACGAAAGGCTGTCGTTACGTGTATCGACGGATGCCAAAAAGTTGATAGTCCGCGC
TGCGGCAATCCAGCAAACCAACCTGACGGATTTTGTGGTCAGTAACATACTACCTGTCGCACAGAAGATTGTTGATGCCG
CCGAACGGGTATATCTGACGGAGCGCGATACTAAAATGATCATGGAAATTTTAGATAACCCGCCAGCGCCGAATGAAAAG
CTTCTTGCCGCTGCTTTCGCCCTGCCGGACATGAAGAAATGA
ATGCCTCAGATAGCTATAGAATCTAACGAAAGGCTGTCGTTACGTGTATCGACGGATGCCAAAAAGTTGATAGTCCGCGC
TGCGGCAATCCAGCAAACCAACCTGACGGATTTTGTGGTCAGTAACATACTACCTGTCGCACAGAAGATTGTTGATGCCG
CCGAACGGGTATATCTGACGGAGCGCGATACTAAAATGATCATGGAAATTTTAGATAACCCGCCAGCGCCGAATGAAAAG
CTTCTTGCCGCTGCTTTCGCCCTGCCGGACATGAAGAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
References
(1) Gul Habib et al. (2018) Bioinformatics and Functional Assessment of Toxin-Antitoxin Systems in Staphylococcus aureus. Toxins 10(11):473. [PubMed:30441856]