Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/- |
| Location | 875914..877346 | Replicon | chromosome |
| Accession | CP012111 | ||
| Organism | Acetobacter pasteurianus strain Ab3 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | - |
| Locus tag | DB34_04120 | Protein ID | AKR48212.1 |
| Coordinates | 875914..876255 (+) | Length | 114 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | DB34_04125 | Protein ID | AKR48213.1 |
| Coordinates | 876258..877346 (+) | Length | 363 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DB34_04090 | 872297..872638 | + | 342 | AKR48209.1 | hypothetical protein | - |
| DB34_04100 | 872812..873987 | + | 1176 | AKR49853.1 | phosphoserine aminotransferase | - |
| DB34_04105 | 874403..874645 | + | 243 | Protein_770 | hypothetical protein | - |
| DB34_04110 | 874647..874847 | + | 201 | AKR48210.1 | hypothetical protein | - |
| DB34_04115 | 875141..875437 | - | 297 | AKR48211.1 | hypothetical protein | - |
| DB34_04120 | 875914..876255 | + | 342 | AKR48212.1 | hypothetical protein | Toxin |
| DB34_04125 | 876258..877346 | + | 1089 | AKR48213.1 | hypothetical protein | Antitoxin |
| DB34_04130 | 877875..879266 | - | 1392 | AKR48214.1 | succinate-semialdehyde dehydrogenase | - |
| DB34_04135 | 879306..880334 | - | 1029 | AKR48215.1 | alcohol dehydrogenase | - |
| DB34_04140 | 880411..881826 | - | 1416 | AKR48216.1 | NAD(P) transhydrogenase subunit beta | - |
| DB34_04145 | 881827..882153 | - | 327 | AKR48217.1 | NAD(P)(+) transhydrogenase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 114 a.a. Molecular weight: 12902.01 Da Isoelectric Point: 10.3435
>T10133 AKR48212.1 CP012111:875914-876255 [Acetobacter pasteurianus]
MNITFQTRKLQKVFNTWALLVRDYGEKQAKVIARRMSVLANAPTLQQVPAQKPERCHKLTNNRKHQYAVDALHPFRIVFK
VNHNPIPLLEDGGIDLSLVTNITICEVVNYHGG
MNITFQTRKLQKVFNTWALLVRDYGEKQAKVIARRMSVLANAPTLQQVPAQKPERCHKLTNNRKHQYAVDALHPFRIVFK
VNHNPIPLLEDGGIDLSLVTNITICEVVNYHGG
Download Length: 342 bp
>T10133 CP012111:875914-876255 [Acetobacter pasteurianus]
ATGAACATAACGTTTCAAACGCGGAAGCTGCAAAAGGTCTTTAACACATGGGCTCTTCTAGTTAGGGATTATGGAGAGAA
GCAAGCTAAAGTAATTGCACGGCGCATGTCCGTATTAGCTAATGCTCCAACTTTGCAGCAGGTACCTGCGCAAAAGCCAG
AACGATGTCACAAGCTTACGAATAACCGTAAACATCAATATGCGGTTGATGCTCTGCATCCCTTCCGCATTGTGTTTAAG
GTAAATCACAACCCGATACCTCTTTTAGAAGATGGAGGCATAGATCTTTCACTAGTCACGAACATAACCATTTGTGAAGT
TGTGAATTACCACGGAGGATAA
ATGAACATAACGTTTCAAACGCGGAAGCTGCAAAAGGTCTTTAACACATGGGCTCTTCTAGTTAGGGATTATGGAGAGAA
GCAAGCTAAAGTAATTGCACGGCGCATGTCCGTATTAGCTAATGCTCCAACTTTGCAGCAGGTACCTGCGCAAAAGCCAG
AACGATGTCACAAGCTTACGAATAACCGTAAACATCAATATGCGGTTGATGCTCTGCATCCCTTCCGCATTGTGTTTAAG
GTAAATCACAACCCGATACCTCTTTTAGAAGATGGAGGCATAGATCTTTCACTAGTCACGAACATAACCATTTGTGAAGT
TGTGAATTACCACGGAGGATAA
Antitoxin
Download Length: 363 a.a. Molecular weight: 40406.28 Da Isoelectric Point: 7.9109
>AT10133 AKR48213.1 CP012111:876258-877346 [Acetobacter pasteurianus]
MLHTNTNNTWAPDYSVHPGEVLEEHLEARDLSQAAFARLCGITPKQVSEIINGKNPITSDTALIFEKVLGVSASIWSGID
ADWQLFQAKEKEKHAAQHCADWIKIFPSDFLKTLKRSVGKDAIAVRNAILSFFGVGSEAAYESRWTGRCAAYRHSPTFTS
QDAALSVWLRLGEIEAEKLEMPPFSKAKLKAAISEIRPLTLLSQAEYMPRIKSILHECGVAFIVIPGIKGAPVSGATHKA
ANGRFIIQASLRHKTNDHFWFTLFHEIGHLMLHGDKIFIEGNSASPSDANQQYERQADEFSTKILLNDKPLDVFPQTREN
ILAFSSRLGIHPGIIVGMLQHRKSLAWHKFSDLRLKMAEDSL
MLHTNTNNTWAPDYSVHPGEVLEEHLEARDLSQAAFARLCGITPKQVSEIINGKNPITSDTALIFEKVLGVSASIWSGID
ADWQLFQAKEKEKHAAQHCADWIKIFPSDFLKTLKRSVGKDAIAVRNAILSFFGVGSEAAYESRWTGRCAAYRHSPTFTS
QDAALSVWLRLGEIEAEKLEMPPFSKAKLKAAISEIRPLTLLSQAEYMPRIKSILHECGVAFIVIPGIKGAPVSGATHKA
ANGRFIIQASLRHKTNDHFWFTLFHEIGHLMLHGDKIFIEGNSASPSDANQQYERQADEFSTKILLNDKPLDVFPQTREN
ILAFSSRLGIHPGIIVGMLQHRKSLAWHKFSDLRLKMAEDSL
Download Length: 1089 bp
>AT10133 CP012111:876258-877346 [Acetobacter pasteurianus]
ATGCTGCATACTAACACGAACAATACTTGGGCACCTGATTATTCTGTTCATCCGGGGGAAGTCCTAGAAGAACATTTGGA
GGCTCGTGACTTAAGTCAAGCTGCATTTGCTCGGCTATGTGGAATTACACCTAAGCAGGTGAGTGAGATTATCAATGGGA
AAAATCCCATTACCTCCGATACAGCATTAATCTTTGAAAAGGTATTAGGGGTTAGTGCGTCCATTTGGTCTGGAATTGAT
GCTGACTGGCAACTCTTTCAGGCAAAAGAAAAAGAGAAACATGCTGCACAACATTGCGCTGATTGGATAAAAATTTTCCC
GTCAGATTTCCTTAAAACATTGAAGAGATCCGTGGGAAAGGACGCTATTGCGGTTCGCAATGCTATCCTGTCATTTTTTG
GTGTTGGATCAGAAGCTGCTTACGAAAGCCGATGGACAGGTCGCTGTGCTGCTTATCGGCACTCTCCTACATTTACCAGC
CAAGATGCTGCTCTTAGCGTCTGGTTGCGCTTAGGAGAAATCGAAGCAGAAAAGCTGGAAATGCCTCCTTTCTCAAAAGC
AAAACTTAAGGCTGCCATTTCTGAAATCCGGCCTCTAACTCTTCTTTCTCAAGCTGAATATATGCCTCGTATAAAAAGCA
TTCTTCATGAATGTGGTGTGGCATTCATCGTTATTCCCGGCATCAAAGGTGCTCCGGTTAGTGGCGCTACGCATAAAGCT
GCAAACGGTCGCTTCATAATCCAAGCGTCACTCCGTCACAAAACAAATGACCATTTTTGGTTCACATTGTTTCACGAAAT
TGGTCATTTAATGCTTCATGGAGACAAAATCTTTATTGAAGGGAATTCCGCTTCCCCCTCTGATGCCAATCAGCAATATG
AGCGCCAAGCAGATGAATTTTCTACGAAAATTTTATTAAATGACAAGCCATTAGATGTATTCCCGCAAACAAGAGAAAAC
ATTTTAGCCTTCTCTAGCCGTTTAGGAATACATCCGGGTATTATTGTCGGTATGTTACAGCATAGAAAATCACTGGCATG
GCACAAATTTTCAGATCTTAGACTGAAAATGGCTGAAGATAGCCTTTAA
ATGCTGCATACTAACACGAACAATACTTGGGCACCTGATTATTCTGTTCATCCGGGGGAAGTCCTAGAAGAACATTTGGA
GGCTCGTGACTTAAGTCAAGCTGCATTTGCTCGGCTATGTGGAATTACACCTAAGCAGGTGAGTGAGATTATCAATGGGA
AAAATCCCATTACCTCCGATACAGCATTAATCTTTGAAAAGGTATTAGGGGTTAGTGCGTCCATTTGGTCTGGAATTGAT
GCTGACTGGCAACTCTTTCAGGCAAAAGAAAAAGAGAAACATGCTGCACAACATTGCGCTGATTGGATAAAAATTTTCCC
GTCAGATTTCCTTAAAACATTGAAGAGATCCGTGGGAAAGGACGCTATTGCGGTTCGCAATGCTATCCTGTCATTTTTTG
GTGTTGGATCAGAAGCTGCTTACGAAAGCCGATGGACAGGTCGCTGTGCTGCTTATCGGCACTCTCCTACATTTACCAGC
CAAGATGCTGCTCTTAGCGTCTGGTTGCGCTTAGGAGAAATCGAAGCAGAAAAGCTGGAAATGCCTCCTTTCTCAAAAGC
AAAACTTAAGGCTGCCATTTCTGAAATCCGGCCTCTAACTCTTCTTTCTCAAGCTGAATATATGCCTCGTATAAAAAGCA
TTCTTCATGAATGTGGTGTGGCATTCATCGTTATTCCCGGCATCAAAGGTGCTCCGGTTAGTGGCGCTACGCATAAAGCT
GCAAACGGTCGCTTCATAATCCAAGCGTCACTCCGTCACAAAACAAATGACCATTTTTGGTTCACATTGTTTCACGAAAT
TGGTCATTTAATGCTTCATGGAGACAAAATCTTTATTGAAGGGAATTCCGCTTCCCCCTCTGATGCCAATCAGCAATATG
AGCGCCAAGCAGATGAATTTTCTACGAAAATTTTATTAAATGACAAGCCATTAGATGTATTCCCGCAAACAAGAGAAAAC
ATTTTAGCCTTCTCTAGCCGTTTAGGAATACATCCGGGTATTATTGTCGGTATGTTACAGCATAGAAAATCACTGGCATG
GCACAAATTTTCAGATCTTAGACTGAAAATGGCTGAAGATAGCCTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|
References
(1) Kai Xia et al. (2019) Characterization and comparative analysis of toxin-antitoxin systems in Acetobacter pasteurianus. Journal of Industrial Microbiology & Biotechnology 46(6):869-882. [PubMed:30805740]