Detailed information of TA system TA101175

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HTH(antitoxin)
• Location: 4632867..4633469
• Replicon: chromosome
• Accession: NZ_CP028429
• Organism: Escherichia coli strain RM9131

Toxin (Protein)

• Gene name: higB
• Uniprot ID: U9XIS6
• Locus tag: ECRM9131_RS24640
• Protein ID: WP_000897305.1
• Coordinates: 4632867..4633178 (+)
• Length: 104 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: ECRM9131_RS24645
• Protein ID: WP_000356397.1
• Coordinates: 4633179..4633469 (+)
• Length: 97 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
ECRM9131_RS24610	4627897..4628682	+	786	WP_000059678.1	DeoR/GlpR family DNA-binding transcription regulator	-
ECRM9131_RS24615	4628781..4629380	+	600	WP_001315111.1	glucose-1-phosphatase	-
ECRM9131_RS24620	4629374..4630246	+	873	WP_000920762.1	virulence factor BrkB family protein	-
ECRM9131_RS24625	4630243..4630680	+	438	WP_000560983.1	D-tyrosyl-tRNA(Tyr) deacylase	-
ECRM9131_RS24630	4630725..4631666	+	942	WP_001297068.1	fatty acid biosynthesis protein FabY	-
ECRM9131_RS24635	4631730..4632638	-	909	WP_001162704.1	alpha/beta hydrolase	-
ECRM9131_RS24640	4632867..4633178	+	312	WP_000897305.1	hypothetical protein	Toxin
ECRM9131_RS24645	4633179..4633469	+	291	WP_000356397.1	helix-turn-helix domain-containing protein	Antitoxin
ECRM9131_RS24655	4634074..4634292	+	219	WP_001295676.1	ribbon-helix-helix domain-containing protein	-
ECRM9131_RS24660	4634511..4634753	+	243	WP_001086388.1	hypothetical protein	-
ECRM9131_RS24665	4635084..4636013	-	930	WP_000027708.1	formate dehydrogenase accessory protein FdhE	-
ECRM9131_RS24670	4636010..4636645	-	636	WP_000829008.1	formate dehydrogenase cytochrome b556 subunit	-
ECRM9131_RS24675	4636642..4637544	-	903	WP_000331369.1	formate dehydrogenase O subunit beta	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Cro/C1-type helix-turn-helix domain (36-85)

Sequences

Toxin

Protein

• Length: 104 a.a.
• Molecular weight: 12190.19 Da
• Isoelectric Point: 9.7791

>T101175 WP_000897305.1 NZ_CP028429:4632867-4633178 [Escherichia coli]
MLFIETEIFTEDVQKLLTDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW

Nucleotide

• Length: 312 bp

>T101175 NZ_CP028429:4632867-4633178 [Escherichia coli]
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGACCGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTGTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA

Antitoxin

Protein

• Length: 97 a.a.
• Molecular weight: 10846.43 Da
• Isoelectric Point: 10.8907

>AT101175 WP_000356397.1 NZ_CP028429:4633179-4633469 [Escherichia coli]
MDKALFERLTHSMAQMNEIIEGTRQPSRTFEVDAMKIKEIRRASGLSQSKFADLISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR

Nucleotide

• Length: 291 bp

>AT101175 NZ_CP028429:4633179-4633469 [Escherichia coli]
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
GCGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCTGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG

Structures

Toxin

• AlphaFold DB: A0A0E0Y7I7