100230

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 3852526..3853180 Replicon chromosome
Accession NZ_CP027758
Organism Pseudomonas synxantha strain R2-54-08W

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag C4J99_RS17180 Protein ID WP_124401067.1
Coordinates 3852526..3852876 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag C4J99_RS17185 Protein ID WP_124401068.1
Coordinates 3852866..3853180 (+) Length 105 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C4J99_RS17170 3849285..3850817 + 1533 WP_124401066.1 NADH-quinone oxidoreductase subunit M -
C4J99_RS17175 3850825..3852288 + 1464 WP_057014624.1 NADH-quinone oxidoreductase subunit NuoN -
C4J99_RS17180 3852526..3852876 + 351 WP_124401067.1 toxin Toxin
C4J99_RS17185 3852866..3853180 + 315 WP_124401068.1 transcriptional regulator Antitoxin
C4J99_RS17190 3853241..3853993 - 753 WP_124401069.1 outer membrane beta-barrel protein -
C4J99_RS17195 3854119..3854952 - 834 WP_124401070.1 arylamine N-acetyltransferase -
C4J99_RS17200 3855071..3855307 + 237 WP_124401071.1 hypothetical protein -
C4J99_RS17205 3855338..3855544 - 207 WP_046068647.1 hypothetical protein -
C4J99_RS17210 3855557..3855736 - 180 WP_124401072.1 hypothetical protein -
C4J99_RS17215 3855851..3856372 + 522 WP_124401073.1 DUF3087 domain-containing protein -
C4J99_RS17220 3856380..3857510 - 1131 WP_124401074.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 13799.73 Da        Isoelectric Point: 9.7334

>T100230 WP_124401067.1 NZ_CP027758:3852526-3852876 [Pseudomonas synxantha]
MDALFIELPAFERHRKDYLSEELFQGFQQELMKNPEAGDLIEGTGGLRKVRFVDERRNKGKRGGLRVIYYWWSGGTQFWL
FTLYGKHEQSDLTPHHKKALKHMLDREIKARTHHET

Download         Length: 351 bp

>T100230 NZ_CP027758:3852526-3852876 [Pseudomonas synxantha]
ATGGATGCTCTATTTATCGAACTGCCGGCATTCGAGCGGCATCGCAAGGACTATCTGAGTGAGGAGCTTTTCCAGGGTTT
TCAACAGGAGTTAATGAAAAACCCCGAAGCAGGAGATTTGATCGAAGGAACGGGCGGGTTGAGAAAGGTTCGCTTCGTTG
ATGAACGGCGAAACAAAGGCAAGCGTGGTGGCCTGCGAGTCATTTACTACTGGTGGTCAGGCGGCACGCAATTCTGGTTA
TTCACCTTGTACGGCAAGCACGAACAGAGCGACCTGACACCCCACCACAAGAAAGCTCTTAAACACATGCTGGACAGGGA
AATCAAAGCGAGAACACATCATGAAACGTGA

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11798.64 Da        Isoelectric Point: 10.3438

>AT100230 WP_124401068.1 NZ_CP027758:3852866-3853180 [Pseudomonas synxantha]
MKRDIFSELVEGFDALADERQDKITLRSHKVHLNKLAPLTADEVIAVRQQLNLSRSVFAMYLRTNIRTLENWEQGRAKPN
AQAVTLIRLVARFPETVAQLAALG

Download         Length: 315 bp

>AT100230 NZ_CP027758:3852866-3853180 [Pseudomonas synxantha]
ATGAAACGTGACATCTTTTCCGAACTGGTCGAAGGCTTCGACGCCCTGGCCGATGAACGCCAGGATAAAATCACCCTGCG
CAGCCACAAGGTCCACCTCAACAAGCTGGCGCCGCTCACCGCTGATGAGGTGATCGCCGTGCGCCAGCAACTCAACCTTT
CCCGGTCGGTATTCGCCATGTACCTGCGTACCAACATCCGCACCCTGGAGAACTGGGAACAAGGCCGGGCCAAACCAAAC
GCTCAGGCCGTCACCCTGATCCGCCTGGTGGCGCGTTTTCCTGAAACCGTGGCGCAACTTGCCGCATTGGGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References