TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | - (AT183) | Predicted domain | - |
| Locus tag | orf3841 | Length | 289 a.a. |
| Coordinates | 4090859..4091728 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf3832 | 4085872..4086579 | + | 708 | ORF3832 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3833 | 4086639..4087991 | - | 1353 | ORF3833 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3834 | 4088049..4089473 | - | 1425 | ORF3834 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3835 | 4089473..4090162 | - | 690 | ORF3835 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3836 | 4090175..4090648 | - | 474 | ORF3836 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3837 | 4090859..4091728 | + | 870 | ORF3837 | Predicted ORF by PRODIGAL Version 1.20 | Antitoxin |
| orf3838 | 4091725..4092372 | - | 648 | ORF3838 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3839 | 4092424..4092936 | + | 513 | ORF3839 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3840 | 4092978..4093274 | - | 297 | ORF3840 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3841 | 4093394..4095331 | - | 1938 | ORF3841 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 33144.89 Da Isoelectric Point: 7.1051
>ORF3837 Orphan_TA_93 Antitoxin
MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS
KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL
GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG
LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI
LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR
MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS
KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL
GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG
LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI
LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR
Download Length: 870 bp
>ORF3837 Orphan_TA_93 Antitoxin
ATGGATCAGGCCGGCATTATTCGCGACCTTTTAATCTGGCTGGAAGGTCATCTGGATCAG
CCCCTGTCGCTCGACAATGTAGCGGCGAAAGCAGGTTATTCCAAGTGGCACTTACAGAGA
ATGTTTAAAGATGTCACTGGCCATGCTATTGGCGCGTATATTCGTGCTCGTCGTTTGTCG
AAATCGGCGGTCGCACTACGCCTGACTGCGCGTCCGATTCTGGACATCGCGCTGCAATAC
CGCTTCGACTCTCAACAGACATTTACCCGCGCATTCAAGAAGCAGTTTGCCCAGACTCCT
GCACTTTACCGCCGTTCTCCTGAATGGAGCGCCTTTGGTATTCGCCCGCCGCTACGTCTG
GGTGAATTCACAATGCCAGAGCACAAATTTGTCACCCTGGAAGATACGCCGCTGATTGGT
GTTACCCAGAGCTACTCCTGTTCGCTGGAGCAAATCTCTGATTTCCGCCATGAAATGCGT
TATCAGTTCTGGCACGATTTTCTCGGCAACGCGCCGACCATTCCGCCGGTGCTCTACGGC
CTGAATGAAACGCGTCCGAGTCAGGATAAAGACGACGAACAAGAGGTATTCTATACCACC
GCGTTAGCCCAGGATCAGGCAGATGGCTATGTACTGACGGGGCATCCGGTGATGCTGCAG
GGCGGCGAATATGTGATGTTTACCTATGAAGGTCTGGGAACCGGCGTGCAGGAGTTTATC
CTGACGGTATACGGAACGTGCATGCCAATGCTCAATCTGACGCGCCGTAAAGGTCAGGAT
ATTGAGCGATACTACCCGGCAGAAGATGCCAAAGCGGGAGATCGCCCAATTAATCTGCGC
TGTGAACTGCTGATTCCGATCCGTCGTTAA
ATGGATCAGGCCGGCATTATTCGCGACCTTTTAATCTGGCTGGAAGGTCATCTGGATCAG
CCCCTGTCGCTCGACAATGTAGCGGCGAAAGCAGGTTATTCCAAGTGGCACTTACAGAGA
ATGTTTAAAGATGTCACTGGCCATGCTATTGGCGCGTATATTCGTGCTCGTCGTTTGTCG
AAATCGGCGGTCGCACTACGCCTGACTGCGCGTCCGATTCTGGACATCGCGCTGCAATAC
CGCTTCGACTCTCAACAGACATTTACCCGCGCATTCAAGAAGCAGTTTGCCCAGACTCCT
GCACTTTACCGCCGTTCTCCTGAATGGAGCGCCTTTGGTATTCGCCCGCCGCTACGTCTG
GGTGAATTCACAATGCCAGAGCACAAATTTGTCACCCTGGAAGATACGCCGCTGATTGGT
GTTACCCAGAGCTACTCCTGTTCGCTGGAGCAAATCTCTGATTTCCGCCATGAAATGCGT
TATCAGTTCTGGCACGATTTTCTCGGCAACGCGCCGACCATTCCGCCGGTGCTCTACGGC
CTGAATGAAACGCGTCCGAGTCAGGATAAAGACGACGAACAAGAGGTATTCTATACCACC
GCGTTAGCCCAGGATCAGGCAGATGGCTATGTACTGACGGGGCATCCGGTGATGCTGCAG
GGCGGCGAATATGTGATGTTTACCTATGAAGGTCTGGGAACCGGCGTGCAGGAGTTTATC
CTGACGGTATACGGAACGTGCATGCCAATGCTCAATCTGACGCGCCGTAAAGGTCAGGAT
ATTGAGCGATACTACCCGGCAGAAGATGCCAAAGCGGGAGATCGCCCAATTAATCTGCGC
TGTGAACTGCTGATTCCGATCCGTCGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT183 | Pseudomonas aeruginosa PAO1 |
34.653 |
35.563 |
0.121 |