TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | ccdB (T10099) | Predicted domain | PF00392 (GntR) |
| Locus tag | orf3099 | Length | 240 a.a. |
| Coordinates | 3267106..3267828 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf3094 | 3262370..3265003 | - | 2634 | ORF3094 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3095 | 3265021..3266937 | - | 1917 | ORF3095 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3096 | 3267106..3267828 | + | 723 | ORF3096 | Predicted ORF by PRODIGAL Version 1.20 | Toxin |
| orf3097 | 3267932..3268801 | - | 870 | ORF3097 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3098 | 3268801..3269967 | - | 1167 | ORF3098 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3099 | 3270061..3271278 | - | 1218 | ORF3099 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 28247.29 Da Isoelectric Point: 6.6599
>ORF3096 Orphan_TA_72 Toxin
MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILE
SIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIFEVIPADDFLQQQLQITAQ
DRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENSKYHFIEEVKKMVIDRSEQEI
IPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGRVFEYSRNAFNTDDYKFTLIAQRKSSR
MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILE
SIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIFEVIPADDFLQQQLQITAQ
DRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENSKYHFIEEVKKMVIDRSEQEI
IPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGRVFEYSRNAFNTDDYKFTLIAQRKSSR
Download Length: 723 bp
>ORF3096 Orphan_TA_72 Toxin
ATGGGACACAAGCCCTTATACCGGCAAATTGCCGATCGCATTCGTGAACAAATTGCGCGT
GGCGAGCTTAAACCTGGCGATGCGTTACCTACCGAATCGGCATTACAAACAGAGTTTGGC
GTCAGCCGGGTTACGGTGCGTCAGGCTTTGCGCCAGTTAGTCGAGCAACAGATCCTCGAA
AGCATTCAGGGCAGCGGGACTTACGTCAAAGAAGAGCGGGTCAATTACGATATTTTTCAG
TTAACCAGTTTTGATGAAAAACTGTCGGACCGTCACGTCGATACACACAGTGAAGTCCTG
ATATTTGAAGTGATTCCGGCTGACGATTTTCTTCAGCAACAGCTACAAATCACCGCGCAG
GATCGTGTGTGGCATGTGAAGCGCGTGCGCTATCGCAAGCAAAAGCCAATGGCGCTGGAA
GAAACCTGGATGCCGCTTGCGTTGTTCCCGGATCTCACCTGGCAGGTCATGGAAAATTCA
AAATATCACTTTATTGAAGAAGTGAAGAAAATGGTTATCGATCGTAGCGAACAGGAAATC
ATTCCTCTGATGCCAACCGAAGAGATGAGCCGTCTGCTTAATATCAGCCAGACAAAGCCG
ATTCTTGAAAAAGTATCGCGTGGATATTTAGTTGATGGTCGGGTGTTTGAATATAGCCGC
AACGCTTTTAATACCGATGACTATAAATTTACCCTGATAGCGCAACGAAAATCATCGCGA
TAA
ATGGGACACAAGCCCTTATACCGGCAAATTGCCGATCGCATTCGTGAACAAATTGCGCGT
GGCGAGCTTAAACCTGGCGATGCGTTACCTACCGAATCGGCATTACAAACAGAGTTTGGC
GTCAGCCGGGTTACGGTGCGTCAGGCTTTGCGCCAGTTAGTCGAGCAACAGATCCTCGAA
AGCATTCAGGGCAGCGGGACTTACGTCAAAGAAGAGCGGGTCAATTACGATATTTTTCAG
TTAACCAGTTTTGATGAAAAACTGTCGGACCGTCACGTCGATACACACAGTGAAGTCCTG
ATATTTGAAGTGATTCCGGCTGACGATTTTCTTCAGCAACAGCTACAAATCACCGCGCAG
GATCGTGTGTGGCATGTGAAGCGCGTGCGCTATCGCAAGCAAAAGCCAATGGCGCTGGAA
GAAACCTGGATGCCGCTTGCGTTGTTCCCGGATCTCACCTGGCAGGTCATGGAAAATTCA
AAATATCACTTTATTGAAGAAGTGAAGAAAATGGTTATCGATCGTAGCGAACAGGAAATC
ATTCCTCTGATGCCAACCGAAGAGATGAGCCGTCTGCTTAATATCAGCCAGACAAAGCCG
ATTCTTGAAAAAGTATCGCGTGGATATTTAGTTGATGGTCGGGTGTTTGAATATAGCCGC
AACGCTTTTAATACCGATGACTATAAATTTACCCTGATAGCGCAACGAAAATCATCGCGA
TAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T10099 | Escherichia coli Nissle 1917 |
33.333 |
54.808 |
0.079 |