TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | vapC (T843) | Predicted domain | - |
| Locus tag | orf4390 | Length | 266 a.a. |
| Coordinates | 4703545..4704345 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf4383 | 4699345..4701606 | - | 2262 | ORF4383 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4384 | 4701729..4702682 | + | 954 | ORF4384 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4385 | 4702570..4703469 | - | 900 | ORF4385 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4386 | 4703545..4704345 | - | 801 | ORF4386 | Predicted ORF by PRODIGAL Version 1.20 | Toxin |
| orf4387 | 4704353..4705375 | - | 1023 | ORF4387 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4388 | 4705486..4706106 | + | 621 | ORF4388 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4389 | 4706168..4706788 | - | 621 | ORF4389 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4390 | 4706852..4708687 | - | 1836 | ORF4390 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 29707.77 Da Isoelectric Point: 5.3280
>ORF4386 Orphan_TA_106 Toxin
MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGRHHVDVGQIRDNLEIKS
YMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDIITNVYRDDEWFMNRHRPEE
MRFFKEAVFKYALYEPGLLEPEGVSKVFFTCDSHEQLLPLEQAINARWGDRVNVSFSTLT
CLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGSAHQRLKD
LHPELEVIGTNADDAVPHYLRKLYLS
MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGRHHVDVGQIRDNLEIKS
YMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDIITNVYRDDEWFMNRHRPEE
MRFFKEAVFKYALYEPGLLEPEGVSKVFFTCDSHEQLLPLEQAINARWGDRVNVSFSTLT
CLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGSAHQRLKD
LHPELEVIGTNADDAVPHYLRKLYLS
Download Length: 801 bp
>ORF4386 Orphan_TA_106 Toxin
TTACGATAAATAGAGTTTACGCAGATAATGCGGCACCGCGTCGTCGGCATTAGTACCAAT
CACTTCCAGCTCGGGATGAAGGTCTTTCAGACGCTGGTGCGCACTGCCCATAATGCAGCC
TTTCCCCGCCATCGACAGCATTTCGGCGTCGTTCATCCCGTCACCAAACGCAATACAATC
CTTCAGGCTGTAGCCCAGTTTCTTCGCCACTGCTTCCAGCGCATGGCCTTTCGACACGCC
GCCCGCCATCACTTCCAGACAGGTTAAGGTAGAGAAACTGACGTTGACGCGATCGCCCCA
GCGAGCGTTAATCGCCTGCTCCAGCGGCAGCAGTTGTTCATGGGAATCGCAGGTGAAAAA
CACTTTGCTGACGCCTTCCGGCTCCAGTAATCCAGGCTCATACAGCGCATATTTGAACAC
CGCTTCTTTAAAAAAGCGCATCTCTTCCGGGCGATGGCGATTCATAAACCATTCGTCGTC
GCGATAAACGTTAGTAATGATGTCCGGATTGTCGTTGACTACGCCAAACAGATCGCTGGC
AATGTCGCGATCCAGGTTATGAGCAAAAATCAGATTACCATCCAGATCGTGAACGCGCGC
ACCATTGGAGGTAATCATGTAAGACTTAATCTCCAGATTATCGCGAATTTGCCCCACATC
AACGTGGTGACGACCGGTCGCAAACACAAAGTTGATGCCGCGCGCGGTGAGCAGCTTCAG
AGTTTCTTTGGCGTAAGGGGATAACGTATGGTCGGGAGAAAGTAACGTGCCATCTAAATC
AGACGCAACAACCTGGTACAT
TTACGATAAATAGAGTTTACGCAGATAATGCGGCACCGCGTCGTCGGCATTAGTACCAAT
CACTTCCAGCTCGGGATGAAGGTCTTTCAGACGCTGGTGCGCACTGCCCATAATGCAGCC
TTTCCCCGCCATCGACAGCATTTCGGCGTCGTTCATCCCGTCACCAAACGCAATACAATC
CTTCAGGCTGTAGCCCAGTTTCTTCGCCACTGCTTCCAGCGCATGGCCTTTCGACACGCC
GCCCGCCATCACTTCCAGACAGGTTAAGGTAGAGAAACTGACGTTGACGCGATCGCCCCA
GCGAGCGTTAATCGCCTGCTCCAGCGGCAGCAGTTGTTCATGGGAATCGCAGGTGAAAAA
CACTTTGCTGACGCCTTCCGGCTCCAGTAATCCAGGCTCATACAGCGCATATTTGAACAC
CGCTTCTTTAAAAAAGCGCATCTCTTCCGGGCGATGGCGATTCATAAACCATTCGTCGTC
GCGATAAACGTTAGTAATGATGTCCGGATTGTCGTTGACTACGCCAAACAGATCGCTGGC
AATGTCGCGATCCAGGTTATGAGCAAAAATCAGATTACCATCCAGATCGTGAACGCGCGC
ACCATTGGAGGTAATCATGTAAGACTTAATCTCCAGATTATCGCGAATTTGCCCCACATC
AACGTGGTGACGACCGGTCGCAAACACAAAGTTGATGCCGCGCGCGGTGAGCAGCTTCAG
AGTTTCTTTGGCGTAAGGGGATAACGTATGGTCGGGAGAAAGTAACGTGCCATCTAAATC
AGACGCAACAACCTGGTACAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T843 | Bradyrhizobium diazoefficiens USDA 110 |
30.645 |
43.972 |
0.071 |