TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type V

Toxin (Protein)


Predicted family ghoT (T6099) Predicted domain Toxin_GhoT_OrtT (ghoT)
Locus tag C1467_RS22610 Length 57 a.a.
Coordinates 4365771..4365944 (-)

Antitoxin (Protein)


Predicted family ghoS (AT6099) Predicted domain GhoS
Locus tag C1467_RS22615 Length 98 a.a.
Coordinates 4365972..4366268 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS22600 4362441..4363898 + 1458 WP_000856829.1 dipeptide/tripeptide permease DtpC -
C1467_RS22605 4364135..4365652 + 1518 WP_001295074.1 lysine--tRNA ligase -
C1467_RS22610 4365771..4365944 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
C1467_RS22615 4365972..4366268 - 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
C1467_RS22620 4366495..4366767 - 273 WP_000405649.1 GNAT family N-acetyltransferase -
C1467_RS22625 4366779..4367009 - 231 WP_000371700.1 4Fe-4S mono-cluster protein YjdI -
C1467_RS22630 4367190..4368821 + 1632 WP_103143212.1 sensor histidine kinase -
C1467_RS22635 4368818..4369537 + 720 WP_000611288.1 two-component system response regulator DcuR -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

Toxin_GhoT_OrtT (ghoT) (E-value: 2.2e-26, Score:90)

(1-55)

Antitoxin

GhoS (E-value: 2.7e-40, Score:134.2)

(2-91)


Sequences

Toxin        


Download         Length: 57 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>WP_001173343.1 TA_34 Toxin
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF*

Download         Length: 174 bp

>WP_001173343.1 TA_34 Toxin
CTAAAAGAGAGAAAAAAGTAATGCCACAGGCAGACTCATTGGCCAGGTTATTCCGACCAG
GAATGCACTAAGTAAACGAATATGTGTTTTCTCATGTGAGATAAACCAGATAATGACAAA
GGATATGTTCACACCAATCACATAAAAAATTAATATTTTAGAGAATAGTGCCAT

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>WP_000398619.1 TA_34 Antitoxin
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTS
LAASEIEDLIRLKCLDLPDIDFDLNIMTVDDYFRQFYK*

Download         Length: 297 bp

>WP_000398619.1 TA_34 Antitoxin
CTACTTGTAAAACTGACGGAAATAGTCATCAACTGTCATAATGTTGAGGTCAAAATCAAT
ATCCGGTAAGTCTAAGCATTTAAGCCTGATTAAATCTTCGATTTCACTTGCGGCTAACGA
TGTCGTTATTGCGAAGGAGTTTTCATTCAATTGTCGTGGTATCCCATATTCATCAGCCAC
GATAGAGGAGAAATTCATATCATACATCAATGATCTTAACCTTAAGAACACTGAGGAATA
AGATGATGGATAATCAAAAGAAACAACATAAGTATTGAACTTGTTTTTACCTTCCAT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T6099 Escherichia coli str. K-12 substr. MG1655

100

100

0.983
Protein Organism Identities (%) Coverage (%) Ha-value
AT6099 Escherichia coli str. K-12 substr. MG1655

100

100

0.99