TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | higA (AT171) | Predicted domain | - |
| Locus tag | C1467_RS03500 | Length | 167 a.a. |
| Coordinates | 658726..659229 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS03460 | 654010..655254 | - | 1245 | WP_000211655.1 | serine/threonine transporter SstT | - |
| C1467_RS03465 | 655653..656618 | - | 966 | WP_001098806.1 | TerC family membrane protein Alx | - |
| C1467_RS03470 | 656901..657887 | - | 987 | WP_001297165.1 | Gfo/Idh/MocA family oxidoreductase | - |
| C1467_RS03475 | 657966..658649 | - | 684 | WP_001183042.1 | vancomycin high temperature exclusion protein | - |
| C1467_RS03480 | 658726..659229 | - | 504 | WP_001295542.1 | M48 family metallopeptidase | Antitoxin |
| C1467_RS03485 | 659314..660450 | + | 1137 | WP_000018690.1 | 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG | - |
| C1467_RS24945 | 660641..660724 | + | 84 | Protein_634 | type II toxin-antitoxin system HigB family toxin | - |
| C1467_RS03495 | 660721..661137 | + | 417 | WP_000560253.1 | type II toxin-antitoxin system antitoxin HigA | - |
| C1467_RS03500 | 661182..663200 | - | 2019 | WP_000121461.1 | NADPH-dependent 2,4-dienoyl-CoA reductase | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 19455.49 Da Isoelectric Point: 9.6803
>WP_001295542.1 Orphan_TA_13 Antitoxin
MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATDKALWQYTQDLKNQFLR
NAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKAEIRVATVFRNAPEPFLRMIVV
HELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQLSLGQDKI*
MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATDKALWQYTQDLKNQFLR
NAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKAEIRVATVFRNAPEPFLRMIVV
HELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQLSLGQDKI*
Download Length: 504 bp
>WP_001295542.1 Orphan_TA_13 Antitoxin
TCAGATTTTGTCCTGCCCAAGCGACAACTGCGTTAGCCACAGCCGGGTGTCGAACTCAAG
CTGGTGGTACTGCGGCTCCATATGGCAGCACAACTGGTAAAACGCTTTGTTATGCTCTTT
CTCCTTCAGGTGCGCCAGTTCGTGCACCACGATCATACGTAAAAACGGTTCCGGCGCGTT
GCGAAACACAGTAGCGACGCGGATCTCTGCTTTTGCTTTCAGCTTGCCGCCCTGCACACG
AGAAACAGCGGTATGTAACCCGAGCGCGTTTTTTAGCACATGGATCTTATTGTCATACAT
CACTTTATTGATCGGCGGGGCATTGCGCAGAAACTGATTTTTTAGATCCTGAGTATATTG
CCAGAGGGCTTTATCGGTGGCGTAGTCGTGTGTTCCCGGATAGCGTTTTGCCAGCACATC
GCCCAGACGCTGTTCGTTAATCAGCGTTCGCACCTGGGAAAGTAGCTGCTCGGGATAACC
CTGAAGATAAGTAAGATTGCTCAT
TCAGATTTTGTCCTGCCCAAGCGACAACTGCGTTAGCCACAGCCGGGTGTCGAACTCAAG
CTGGTGGTACTGCGGCTCCATATGGCAGCACAACTGGTAAAACGCTTTGTTATGCTCTTT
CTCCTTCAGGTGCGCCAGTTCGTGCACCACGATCATACGTAAAAACGGTTCCGGCGCGTT
GCGAAACACAGTAGCGACGCGGATCTCTGCTTTTGCTTTCAGCTTGCCGCCCTGCACACG
AGAAACAGCGGTATGTAACCCGAGCGCGTTTTTTAGCACATGGATCTTATTGTCATACAT
CACTTTATTGATCGGCGGGGCATTGCGCAGAAACTGATTTTTTAGATCCTGAGTATATTG
CCAGAGGGCTTTATCGGTGGCGTAGTCGTGTGTTCCCGGATAGCGTTTTGCCAGCACATC
GCCCAGACGCTGTTCGTTAATCAGCGTTCGCACCTGGGAAAGTAGCTGCTCGGGATAACC
CTGAAGATAAGTAAGATTGCTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT171 | Vibrio cholerae O1 biovar El Tor str. N16961 |
34.884 |
40.952 |
0.089 |