MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 131859 bp
Accession: NZ_OW704291 Location: 3654172..3786030 Organism: Salmonella enterica subsp. enterica serovar Typhi strain BRD948 Replicon: chromosome
Accession: NZ_OW704291 Location: 3654172..3786030 Organism: Salmonella enterica subsp. enterica serovar Typhi strain BRD948 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBX00_RS17920 | 3649971..3651272 | + | 1302 | WP_000637594.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| NBX00_RS17925 | 3651393..3651740 | + | 348 | WP_000887832.1 | divalent cation tolerance protein CutA | - |
| NBX00_RS17930 | 3651716..3653419 | + | 1704 | WP_000068881.1 | protein-disulfide reductase DsbD | - |
| NBX00_RS17935 | 3653456..3654031 | + | 576 | WP_001188506.1 | transcriptional regulator | - |
| NBX00_RS17945 | 3654382..3655641 | + | 1260 | WP_000954536.1 | Prophage integrase IntS ; Integrase | Integrase |
| NBX00_RS17950 | 3655952..3657235 | + | 1284 | WP_000975154.1 | SH3 domain-containing protein | - |
| NBX00_RS17955 | 3657320..3657589 | + | 270 | Protein_3513 | integrase | - |
| NBX00_RS17960 | 3658216..3658998 | - | 783 | WP_000511749.1 | hypothetical protein ; Integrase | Integrase |
| NBX00_RS17965 | 3659268..3659462 | + | 195 | WP_162009227.1 | hypothetical protein | - |
| NBX00_RS17970 | 3659855..3660076 | - | 222 | WP_000193665.1 | helix-turn-helix transcriptional regulator | - |
| NBX00_RS17975 | 3660073..3660534 | - | 462 | WP_000246267.1 | hypothetical protein | - |
| NBX00_RS17980 | 3661081..3662754 | + | 1674 | WP_010989301.1 | hypothetical protein | - |
| NBX00_RS17985 | 3662835..3665120 | + | 2286 | WP_010989300.1 | hypothetical protein | - |
| NBX00_RS17990 | 3665424..3665675 | + | 252 | WP_024131240.1 | hypothetical protein | - |
| NBX00_RS17995 | 3665757..3666209 | + | 453 | WP_000434168.1 | hypothetical protein | - |
| NBX00_RS18000 | 3666389..3666877 | - | 489 | WP_000622308.1 | GNAT family N-acetyltransferase | Toxin Detail |
| NBX00_RS18005 | 3666874..3667167 | - | 294 | WP_001143724.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| NBX00_RS18010 | 3667594..3668607 | - | 1014 | WP_000449622.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| NBX00_RS18015 | 3668771..3670360 | - | 1590 | WP_000488995.1 | TraI domain-containing protein | - |
| NBX00_RS18020 | 3670344..3671855 | - | 1512 | WP_001120833.1 | UvrD-helicase domain-containing protein | - |
| NBX00_RS18025 | 3672709..3673248 | + | 540 | WP_001210944.1 | Vi polysaccharide biosynthesis regulator TviA | - |
| NBX00_RS18030 | 3673493..3674770 | + | 1278 | WP_000466893.1 | UDP-N-acetyl-D-glucosamine 6-dehydrogenase | VF |
| NBX00_RS18035 | 3674773..3675819 | + | 1047 | WP_000127915.1 | UDP-N-acetylglucosamine 4-epimerase | VF |
| NBX00_RS18040 | 3675843..3678338 | + | 2496 | WP_010989299.1 | hypothetical protein | VF |
| NBX00_RS18045 | 3678338..3680074 | + | 1737 | WP_000632615.1 | hypothetical protein | VF |
| NBX00_RS18050 | 3680119..3681186 | + | 1068 | WP_000720235.1 | hypothetical protein | VF |
| NBX00_RS18055 | 3681196..3681990 | + | 795 | WP_001023498.1 | hypothetical protein | VF |
| NBX00_RS18060 | 3682016..3682711 | + | 696 | WP_000467404.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
| NBX00_RS18065 | 3682734..3684038 | + | 1305 | WP_000431675.1 | hypothetical protein | VF |
| NBX00_RS18070 | 3684058..3686028 | + | 1971 | WP_000052242.1 | hypothetical protein | VF |
| NBX00_RS18075 | 3686330..3687076 | - | 747 | WP_000354257.1 | class I SAM-dependent methyltransferase | - |
| NBX00_RS18080 | 3687076..3687966 | - | 891 | WP_001681808.1 | class I SAM-dependent methyltransferase | - |
| NBX00_RS18085 | 3687977..3688234 | - | 258 | WP_001681810.1 | YjhX family toxin | - |
| NBX00_RS18090 | 3688536..3688646 | - | 111 | Protein_3540 | autoinducer 2 ABC transporter substrate-binding protein | - |
| NBX00_RS18095 | 3688881..3689225 | + | 345 | Protein_3541 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NBX00_RS18100 | 3689341..3690366 | - | 1026 | WP_000027757.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| NBX00_RS18105 | 3690370..3691002 | - | 633 | WP_000052560.1 | helix-turn-helix domain-containing protein | - |
| NBX00_RS18110 | 3691119..3691361 | + | 243 | WP_000102106.1 | Rha family transcriptional regulator | - |
| NBX00_RS18115 | 3691394..3691903 | + | 510 | WP_000460852.1 | phage regulatory CII family protein | - |
| NBX00_RS18120 | 3691911..3692111 | + | 201 | WP_000956167.1 | DUF2724 domain-containing protein | - |
| NBX00_RS18125 | 3692075..3692416 | + | 342 | WP_000963479.1 | DUF5347 family protein | - |
| NBX00_RS18130 | 3692484..3692717 | + | 234 | WP_001244240.1 | DUF2732 family protein | - |
| NBX00_RS18135 | 3692717..3692944 | + | 228 | WP_000785510.1 | TraR/DksA family transcriptional regulator | - |
| NBX00_RS18140 | 3692941..3693525 | + | 585 | WP_001090717.1 | exonuclease domain-containing protein | - |
| NBX00_RS18145 | 3693522..3694382 | + | 861 | WP_000104130.1 | DNA adenine methylase | - |
| NBX00_RS18150 | 3694373..3696781 | + | 2409 | WP_000301193.1 | replication endonuclease | - |
| NBX00_RS18155 | 3696949..3697137 | + | 189 | WP_001154438.1 | hypothetical protein | - |
| NBX00_RS18160 | 3697149..3697382 | + | 234 | WP_001217561.1 | DinI family protein | - |
| NBX00_RS18165 | 3697478..3697696 | + | 219 | WP_000835188.1 | hypothetical protein | - |
| NBX00_RS18170 | 3697706..3698770 | + | 1065 | WP_000829584.1 | hypothetical protein | - |
| NBX00_RS18175 | 3698767..3699831 | + | 1065 | WP_000789323.1 | hypothetical protein | - |
| NBX00_RS18180 | 3699851..3700546 | + | 696 | WP_000080839.1 | hypothetical protein | - |
| NBX00_RS18185 | 3700595..3701638 | - | 1044 | WP_001681813.1 | phage portal protein | - |
| NBX00_RS18190 | 3701638..3703404 | - | 1767 | WP_001098453.1 | terminase ATPase subunit family protein | - |
| NBX00_RS18195 | 3703547..3704380 | + | 834 | WP_000216272.1 | GPO family capsid scaffolding protein | - |
| NBX00_RS18200 | 3704397..3705461 | + | 1065 | WP_000730751.1 | phage major capsid protein, P2 family | - |
| NBX00_RS18205 | 3705465..3706115 | + | 651 | WP_000059175.1 | terminase endonuclease subunit | - |
| NBX00_RS18210 | 3706209..3706673 | + | 465 | WP_000673540.1 | head completion/stabilization protein | - |
| NBX00_RS18215 | 3706673..3706876 | + | 204 | WP_000868184.1 | tail protein X | - |
| NBX00_RS18220 | 3706880..3707095 | + | 216 | WP_000171566.1 | HP1 family phage holin | - |
| NBX00_RS18225 | 3707076..3707585 | + | 510 | WP_001097942.1 | lysozyme | - |
| NBX00_RS18230 | 3707590..3707967 | + | 378 | WP_000731034.1 | DNZ54_00345 family protein | - |
| NBX00_RS18235 | 3707964..3708392 | + | 429 | WP_024131238.1 | Rz-like lysis system protein LysB | - |
| NBX00_RS18240 | 3708277..3708525 | + | 249 | WP_223229656.1 | Rz1-like lysis system protein LysC | - |
| NBX00_RS18245 | 3708488..3708919 | + | 432 | WP_001039966.1 | phage tail protein | - |
| NBX00_RS18250 | 3708912..3709358 | + | 447 | WP_000343944.1 | phage virion morphogenesis protein | - |
| NBX00_RS18255 | 3709427..3710005 | + | 579 | WP_000993749.1 | phage baseplate assembly protein V | - |
| NBX00_RS18260 | 3710002..3710361 | + | 360 | WP_000177408.1 | GPW/gp25 family protein | - |
| NBX00_RS18265 | 3710348..3711256 | + | 909 | WP_000268327.1 | baseplate assembly protein | - |
| NBX00_RS18270 | 3711249..3711854 | + | 606 | WP_001086816.1 | phage tail protein I | - |
| NBX00_RS18275 | 3711851..3713470 | + | 1620 | WP_000104806.1 | phage tail protein | - |
| NBX00_RS18280 | 3713477..3713884 | + | 408 | WP_000006337.1 | tail fiber assembly protein | - |
| NBX00_RS18285 | 3714082..3714804 | - | 723 | WP_000161708.1 | Guanine nucleotide exchange factor SopE | VF |
| NBX00_RS18290 | 3715015..3715236 | + | 222 | Protein_3580 | helix-turn-helix domain-containing protein | - |
| NBX00_RS18295 | 3715339..3716511 | + | 1173 | WP_000046101.1 | phage tail sheath protein | - |
| NBX00_RS18300 | 3716521..3717036 | + | 516 | WP_001207653.1 | phage major tail tube protein | - |
| NBX00_RS18305 | 3717091..3717393 | + | 303 | WP_001280965.1 | phage tail assembly protein | - |
| NBX00_RS18310 | 3717408..3717527 | + | 120 | WP_000763315.1 | GpE family phage tail protein | - |
| NBX00_RS18315 | 3717520..3720300 | + | 2781 | WP_001282813.1 | phage tail tape measure protein | - |
| NBX00_RS18320 | 3720300..3720785 | + | 486 | WP_000980405.1 | phage tail protein | - |
| NBX00_RS18325 | 3720782..3721882 | + | 1101 | WP_001011750.1 | phage late control D family protein | - |
| NBX00_RS18330 | 3721950..3722168 | + | 219 | WP_001775272.1 | ogr/Delta-like zinc finger family protein | - |
| NBX00_RS18335 | 3722255..3722632 | - | 378 | WP_001039750.1 | hypothetical protein | - |
| NBX00_RS18340 | 3722765..3722851 | + | 87 | Protein_3590 | peptidase | - |
| NBX00_RS18345 | 3722851..3724125 | + | 1275 | WP_000457555.1 | Y-family DNA polymerase | - |
| NBX00_RS18350 | 3724257..3724526 | + | 270 | WP_001222413.1 | hypothetical protein | - |
| NBX00_RS18355 | 3724626..3724952 | - | 327 | WP_000911568.1 | DUF3085 domain-containing protein | - |
| NBX00_RS18360 | 3725027..3725926 | - | 900 | WP_000022217.1 | hypothetical protein | - |
| NBX00_RS18365 | 3726000..3726908 | - | 909 | WP_000881183.1 | hypothetical protein | - |
| NBX00_RS18370 | 3726980..3728929 | - | 1950 | WP_001097965.1 | zincin-like metallopeptidase domain-containing protein | - |
| NBX00_RS18375 | 3729018..3729476 | - | 459 | WP_000115421.1 | hypothetical protein | - |
| NBX00_RS18380 | 3729554..3729850 | - | 297 | WP_000968700.1 | hypothetical protein | - |
| NBX00_RS18385 | 3729847..3730299 | - | 453 | WP_000979718.1 | hypothetical protein | - |
| NBX00_RS18390 | 3730317..3730526 | - | 210 | WP_000018145.1 | hypothetical protein | - |
| NBX00_RS18395 | 3730897..3731277 | - | 381 | WP_001103837.1 | hypothetical protein | - |
| NBX00_RS18400 | 3731373..3731675 | - | 303 | WP_001020123.1 | hypothetical protein | - |
| NBX00_RS18405 | 3732399..3733319 | - | 921 | WP_000907593.1 | hypothetical protein ; Integrase | Integrase |
| NBX00_RS18410 | 3734585..3735127 | + | 543 | WP_010989295.1 | DUF1062 domain-containing protein | - |
| NBX00_RS18415 | 3735338..3735979 | - | 642 | WP_000502502.1 | ParB N-terminal domain-containing protein | - |
| NBX00_RS18420 | 3735964..3737211 | - | 1248 | WP_001283066.1 | phosphoadenosine phosphosulfate reductase | - |
| NBX00_RS18425 | 3737450..3738955 | - | 1506 | WP_000213770.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| NBX00_RS18430 | 3739288..3740685 | - | 1398 | WP_014341560.1 | integrating conjugative element protein | - |
| NBX00_RS18435 | 3740733..3741701 | - | 969 | WP_000838927.1 | TIGR03756 family integrating conjugative element protein | - |
| NBX00_RS18440 | 3741698..3742090 | - | 393 | WP_000821941.1 | TIGR03757 family integrating conjugative element protein | - |
| NBX00_RS18445 | 3742245..3742631 | - | 387 | WP_000054770.1 | hypothetical protein | - |
| NBX00_RS18450 | 3742786..3745502 | - | 2717 | Protein_3612 | conjugative transfer ATPase | - |
| NBX00_RS18455 | 3745622..3746071 | - | 450 | WP_000244536.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| NBX00_RS18460 | 3746058..3747536 | - | 1479 | WP_001165842.1 | TIGR03752 family integrating conjugative element protein | - |
| NBX00_RS18465 | 3747526..3748425 | - | 900 | WP_001240640.1 | TIGR03749 family integrating conjugative element protein | - |
| NBX00_RS18470 | 3748425..3749078 | - | 654 | WP_000086082.1 | TIGR03746 family integrating conjugative element protein | - |
| NBX00_RS18475 | 3749075..3749449 | - | 375 | WP_000848326.1 | TIGR03750 family conjugal transfer protein | - |
| NBX00_RS18480 | 3749459..3749824 | - | 366 | WP_223228898.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| NBX00_RS18485 | 3749851..3750084 | - | 234 | WP_015899494.1 | TIGR03758 family integrating conjugative element protein | - |
| NBX00_RS18490 | 3750090..3750362 | - | 273 | WP_001686573.1 | RAQPRD family integrative conjugative element protein | - |
| NBX00_RS18495 | 3750581..3751339 | - | 759 | WP_010989289.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| NBX00_RS18500 | 3751336..3753426 | - | 2091 | WP_000071290.1 | type IV conjugative transfer system coupling protein TraD | - |
| NBX00_RS18505 | 3753446..3754015 | - | 570 | WP_000626967.1 | restriction endonuclease | - |
| NBX00_RS18510 | 3754025..3754525 | - | 501 | WP_000253629.1 | integrating conjugative element protein | - |
| NBX00_RS18515 | 3754561..3755247 | - | 687 | WP_000013624.1 | hypothetical protein | VF |
| NBX00_RS18520 | 3755226..3755912 | - | 687 | WP_223229647.1 | TIGR03759 family integrating conjugative element protein | - |
| NBX00_RS18525 | 3755985..3756899 | - | 915 | WP_000214158.1 | hypothetical protein | - |
| NBX00_RS18530 | 3756856..3757218 | - | 363 | WP_001149494.1 | hypothetical protein | - |
| NBX00_RS18535 | 3757406..3758281 | - | 876 | WP_000994659.1 | hypothetical protein | - |
| NBX00_RS18540 | 3758493..3758960 | - | 468 | WP_000455463.1 | hypothetical protein | - |
| NBX00_RS18545 | 3759057..3760208 | - | 1152 | WP_000089603.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| NBX00_RS18550 | 3760556..3761863 | - | 1308 | WP_000744276.1 | hypothetical protein | VF |
| NBX00_RS18555 | 3761860..3762522 | - | 663 | WP_000218700.1 | hypothetical protein | VF |
| NBX00_RS18560 | 3762519..3762962 | - | 444 | WP_223228896.1 | hypothetical protein | VF |
| NBX00_RS18565 | 3763005..3763601 | - | 597 | WP_024131234.1 | hypothetical protein | VF |
| NBX00_RS18570 | 3763640..3764725 | - | 1086 | WP_000074784.1 | hypothetical protein | VF |
| NBX00_RS18575 | 3764722..3766437 | - | 1716 | WP_001289222.1 | hypothetical protein | VF |
| NBX00_RS18580 | 3766447..3766827 | - | 381 | WP_014341558.1 | hypothetical protein | VF |
| NBX00_RS18585 | 3767015..3768301 | - | 1287 | WP_000763621.1 | hypothetical protein | VF |
| NBX00_RS18590 | 3768303..3768641 | - | 339 | WP_048657783.1 | Outer membrane lipoprotein BfpB | VF |
| NBX00_RS18595 | 3768607..3769542 | - | 936 | WP_049783585.1 | hypothetical protein | VF |
| NBX00_RS18600 | 3770013..3770432 | - | 420 | WP_000539682.1 | hypothetical protein | VF |
| NBX00_RS18605 | 3770435..3771679 | - | 1245 | WP_001095932.1 | hypothetical protein | VF |
| NBX00_RS18610 | 3771844..3772794 | - | 951 | Protein_3644 | ISNCY family transposase ISPlu22 | VF |
| NBX00_RS18615 | 3772860..3773396 | - | 537 | WP_000157067.1 | single-stranded DNA-binding protein | - |
| NBX00_RS18620 | 3773409..3773627 | - | 219 | WP_000958171.1 | hypothetical protein | - |
| NBX00_RS18625 | 3773708..3774157 | - | 450 | WP_000032521.1 | STY4534 family ICE replication protein | - |
| NBX00_RS18630 | 3774825..3776819 | - | 1995 | WP_001241572.1 | DNA topoisomerase III | - |
| NBX00_RS18635 | 3776930..3777706 | - | 777 | WP_001290444.1 | TIGR03761 family integrating conjugative element protein | - |
| NBX00_RS18640 | 3778295..3779605 | - | 1311 | WP_001194350.1 | STY4528 family pathogenicity island replication protein | - |
| NBX00_RS18645 | 3779635..3779883 | - | 249 | WP_000377625.1 | hypothetical protein | - |
| NBX00_RS18650 | 3779883..3780440 | - | 558 | WP_000144322.1 | DUF2857 domain-containing protein | - |
| NBX00_RS18655 | 3780525..3781247 | - | 723 | WP_001275616.1 | DUF2786 domain-containing protein | - |
| NBX00_RS18660 | 3781234..3781494 | - | 261 | WP_000838568.1 | hypothetical protein | - |
| NBX00_RS18665 | 3781708..3783507 | - | 1800 | WP_001029724.1 | ParB family protein | - |
| NBX00_RS18670 | 3783500..3784864 | - | 1365 | WP_000018529.1 | SPI-7-type island replicative DNA helicase | - |
| NBX00_RS18675 | 3784861..3785895 | - | 1035 | WP_001195363.1 | hypothetical protein | VF |
| NBX00_RS18680 | 3786109..3786183 | - | 75 | Protein_3658 | helix-turn-helix domain-containing protein | - |
| NBX00_RS18685 | 3786563..3786640 | + | 78 | Protein_3659 | porin family protein | - |
| NBX00_RS18690 | 3786740..3787492 | + | 753 | WP_001785756.1 | non-specific acid phosphatase | - |
| NBX00_RS18695 | 3787733..3788224 | - | 492 | WP_000626103.1 | GNAT family N-acetyltransferase | - |
| NBX00_RS18700 | 3788221..3788514 | - | 294 | WP_001110456.1 | DUF1778 domain-containing protein | - |
| NBX00_RS18705 | 3788831..3789053 | + | 223 | Protein_3663 | hypothetical protein | - |
| NBX00_RS18710 | 3789319..3790194 | + | 876 | WP_000921674.1 | AraC family transcriptional regulator | - |
| NBX00_RS18715 | 3790191..3790478 | + | 288 | WP_001269916.1 | transcriptional regulator RtsB | - |
| NBX00_RS18720 | 3790501..3790717 | + | 217 | Protein_3666 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|