MGE detailed information
MGE type: Genomic_island MGE length: 40951 bp
Accession: NZ_LT992492 Location: 2151120..2192070 Organism: Vibrio cholerae strain 4295STDY6534248 Replicon: chromosome
Accession: NZ_LT992492 Location: 2151120..2192070 Organism: Vibrio cholerae strain 4295STDY6534248 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DG169_RS10150 () | 2146385..2150947 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| DG169_RS10155 () | 2151120..2151767 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| DG169_RS10160 () | 2151770..2152678 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| DG169_RS10165 () | 2152687..2153160 | - | 474 | WP_053029780.1 | RDD family protein | - |
| DG169_RS10170 () | 2153176..2153946 | - | 771 | WP_001880633.1 | accessory colonization factor AcfC | - |
| DG169_RS10175 () | 2153952..2155832 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| DG169_RS10180 () | 2155839..2156600 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| DG169_RS10185 () | 2156600..2157430 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| DG169_RS10190 () | 2157637..2158653 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| DG169_RS10195 () | 2158663..2159685 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| DG169_RS10200 () | 2159660..2161171 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| DG169_RS10205 () | 2161161..2161619 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| DG169_RS10210 () | 2161635..2162471 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| DG169_RS10215 () | 2162459..2162914 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| DG169_RS10220 () | 2162907..2164376 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| DG169_RS10225 () | 2164379..2164831 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| DG169_RS10230 () | 2164831..2166123 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| DG169_RS10235 () | 2166203..2166877 | - | 675 | WP_050926100.1 | toxin-coregulated pilus major pilin TcpA | - |
| DG169_RS10240 () | 2167420..2167830 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| DG169_RS10245 () | 2167815..2168480 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| DG169_RS10250 () | 2168921..2170783 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| DG169_RS10255 () | 2171059..2171553 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| DG169_RS10260 () | 2171663..2172601 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| DG169_RS10265 () | 2172598..2177199 | - | 4602 | WP_000482254.1 | membrane protein | - |
| DG169_RS10270 () | 2177312..2180353 | - | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| DG169_RS10275 () | 2180533..2182053 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| DG169_RS10280 () | 2182395..2183075 | + | 681 | Protein_1920 | IS5 family transposase | - |
| DG169_RS10285 () | 2183101..2184078 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| DG169_RS10295 () | 2184682..2186043 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| DG169_RS10300 () | 2186040..2186507 | + | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| DG169_RS10305 () | 2186935..2187513 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| DG169_RS10310 () | 2187517..2190453 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| DG169_RS10315 () | 2190523..2191227 | + | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| DG169_RS10320 () | 2191561..2192070 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| DG169_RS10325 () | 2192268..2193947 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| DG169_RS10335 () | 2194170..2194853 | + | 684 | WP_000841479.1 | MFS transporter | - |
| DG169_RS10340 () | 2194921..2196537 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|