MGE detailed information
MGE type: Conjugative plasmid MGE length: 61361 bp
Accession: NZ_LT985193 Location: 1..61361 Organism: Pseudomonas syringae strain CFBP 2116 Replicon: plasmid PP2
Accession: NZ_LT985193 Location: 1..61361 Organism: Pseudomonas syringae strain CFBP 2116 Replicon: plasmid PP2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DTQ61_RS29085 () | 881..2227 | + | 1347 | WP_095077770.1 | hypothetical protein | - |
| DTQ61_RS29090 () | 2408..2703 | - | 296 | Protein_1 | DDE-type integrase/transposase/recombinase | - |
| DTQ61_RS29095 () | 2964..3404 | + | 441 | WP_044319945.1 | hypothetical protein | - |
| DTQ61_RS29100 () | 3803..4318 | + | 516 | WP_031598251.1 | GAF domain-containing protein | - |
| DTQ61_RS29105 () | 4643..5173 | + | 531 | WP_031598249.1 | hypothetical protein | - |
| DTQ61_RS29110 () | 5275..5556 | - | 282 | Protein_5 | IS91 family transposase ISWz1 | Transposase |
| DTQ61_RS29115 () | 5800..6327 | + | 528 | Protein_6 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| DTQ61_RS29120 () | 6420..6698 | + | 279 | WP_053479513.1 | hypothetical protein | - |
| DTQ61_RS29125 () | 6749..6934 | + | 186 | WP_005730485.1 | hypothetical protein | Antitoxin Detail |
| DTQ61_RS29130 () | 6924..7196 | + | 273 | WP_003348606.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DTQ61_RS29135 () | 7407..8120 | + | 714 | WP_053479514.1 | UPF0149 family protein | - |
| DTQ61_RS29140 () | 8225..8556 | - | 332 | Protein_11 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| DTQ61_RS29145 () | 8554..8766 | - | 213 | Protein_12 | DUF4158 domain-containing protein | - |
| DTQ61_RS29150 () | 8770..8958 | - | 189 | Protein_13 | helix-turn-helix domain-containing protein | - |
| DTQ61_RS29155 () | 8997..9818 | - | 822 | WP_005735297.1 | C58 family peptidase | - |
| DTQ61_RS29160 () | 10147..11085 | + | 939 | Protein_15 | DNA cytosine methyltransferase | - |
| DTQ61_RS29165 () | 11178..11459 | + | 282 | WP_015062535.1 | hypothetical protein | - |
| DTQ61_RS29170 () | 11440..12669 | + | 1230 | WP_015062536.1 | IS91 family transposase IS801 | Transposase |
| DTQ61_RS29180 () | 12914..14227 | - | 1314 | WP_111780205.1 | replication initiation protein | - |
| DTQ61_RS29185 () | 14625..14852 | - | 228 | WP_099264555.1 | hypothetical protein | - |
| DTQ61_RS29190 () | 14869..15771 | - | 903 | WP_103379443.1 | hypothetical protein | - |
| DTQ61_RS29200 () | 16125..16553 | - | 429 | WP_015060872.1 | GntR family transcriptional regulator | - |
| DTQ61_RS30985 () | 16683..16820 | - | 138 | WP_015060871.1 | hypothetical protein | - |
| DTQ61_RS29205 () | 16897..17136 | - | 240 | WP_004666950.1 | hypothetical protein | - |
| DTQ61_RS29210 () | 17201..20977 | - | 3777 | WP_111780206.1 | hypothetical protein | Relaxase |
| DTQ61_RS29215 () | 20967..21692 | - | 726 | WP_044320119.1 | relaxosome protein | - |
| DTQ61_RS29220 () | 22045..22344 | + | 300 | WP_032074567.1 | hypothetical protein | - |
| DTQ61_RS29225 () | 22357..23013 | - | 657 | WP_031599151.1 | hypothetical protein | - |
| DTQ61_RS29230 () | 23021..23749 | - | 729 | WP_054082423.1 | hypothetical protein | - |
| DTQ61_RS29235 () | 24007..24612 | - | 606 | WP_111780207.1 | single-stranded DNA-binding protein | - |
| DTQ61_RS29240 () | 24640..24924 | - | 285 | WP_060404308.1 | hypothetical protein | - |
| DTQ61_RS29245 () | 24953..27118 | - | 2166 | WP_103377082.1 | type IA DNA topoisomerase | - |
| DTQ61_RS29250 () | 27233..27952 | + | 720 | WP_143515740.1 | hypothetical protein | - |
| DTQ61_RS29255 () | 27941..28492 | - | 552 | WP_095205442.1 | hypothetical protein | - |
| DTQ61_RS29260 () | 28580..28978 | - | 399 | WP_135186142.1 | hypothetical protein | - |
| DTQ61_RS29265 () | 29008..29370 | - | 363 | WP_044310704.1 | Killer protein | - |
| DTQ61_RS29270 () | 29411..31064 | - | 1654 | Protein_36 | Conjugal transfer protein TraG | VF |
| DTQ61_RS29275 () | 31064..31297 | - | 234 | WP_053486459.1 | hypothetical protein | - |
| DTQ61_RS29280 () | 31294..31512 | - | 219 | WP_053480608.1 | hypothetical protein | VF |
| DTQ61_RS29285 () | 31512..31745 | - | 234 | WP_004667999.1 | hypothetical protein | - |
| DTQ61_RS29290 () | 31861..34278 | - | 2418 | WP_103377083.1 | ATP-binding protein | - |
| DTQ61_RS29295 () | 34404..34676 | - | 273 | WP_111780208.1 | hypothetical protein | - |
| DTQ61_RS29300 () | 34801..35544 | - | 744 | Protein_42 | hypothetical protein | - |
| DTQ61_RS29305 () | 35592..35948 | - | 357 | WP_024650171.1 | hypothetical protein | - |
| DTQ61_RS29310 () | 35933..36319 | - | 387 | WP_111780209.1 | hypothetical protein | - |
| DTQ61_RS29315 () | 36329..37387 | - | 1059 | WP_057433464.1 | Type IV secretion system protein VirB11 | VF |
| DTQ61_RS29320 () | 37397..38776 | - | 1380 | WP_111780210.1 | hypothetical protein | VF |
| DTQ61_RS29325 () | 38763..39572 | - | 810 | WP_111780211.1 | P-type conjugative transfer protein VirB9 | - |
| DTQ61_RS29330 () | 39562..40350 | - | 789 | WP_111780212.1 | type IV secretion system protein | - |
| DTQ61_RS29335 () | 40387..40659 | - | 273 | WP_081080468.1 | conjugal transfer protein | - |
| DTQ61_RS29340 () | 40733..41665 | - | 933 | WP_111780213.1 | type IV secretion system protein | - |
| DTQ61_RS29345 () | 41676..42029 | - | 354 | WP_111780214.1 | hypothetical protein | - |
| DTQ61_RS29350 () | 42062..42748 | - | 687 | WP_099456665.1 | P-type DNA transfer protein VirB5 | - |
| DTQ61_RS29355 () | 42745..45297 | - | 2553 | WP_191985307.1 | conjugal transfer protein | - |
| DTQ61_RS29360 () | 45233..45634 | - | 402 | Protein_54 | VirB3 family type IV secretion system protein | - |
| DTQ61_RS29365 () | 45647..45982 | - | 336 | WP_103724610.1 | conjugal transfer protein | - |
| DTQ61_RS29370 () | 45982..46689 | - | 708 | WP_111780216.1 | Type IV secretion system protein virB1 | VF |
| DTQ61_RS29375 () | 47040..47270 | - | 231 | WP_010215521.1 | helix-turn-helix domain-containing protein | - |
| DTQ61_RS29380 () | 47358..48023 | + | 666 | WP_024647998.1 | LexA family transcriptional regulator | - |
| DTQ61_RS29385 () | 48447..48701 | - | 255 | WP_003381801.1 | hypothetical protein | - |
| DTQ61_RS29390 () | 48737..49369 | - | 633 | WP_111780217.1 | ParA family protein | - |
| DTQ61_RS29395 () | 49660..50338 | + | 679 | Protein_61 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| DTQ61_RS29400 () | 50338..50529 | + | 192 | WP_010208571.1 | hypothetical protein | - |
| DTQ61_RS30990 () | 50712..50885 | + | 174 | WP_005759896.1 | hypothetical protein | - |
| DTQ61_RS29405 () | 50885..51490 | + | 606 | WP_044311023.1 | hypothetical protein | - |
| DTQ61_RS29410 () | 51566..51841 | - | 276 | Protein_65 | hypothetical protein | - |
| DTQ61_RS29415 () | 52193..53227 | - | 1035 | WP_057427112.1 | IS110 family transposase ISPsy16 | Transposase |
| DTQ61_RS29420 () | 53541..53813 | + | 273 | WP_015060662.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| DTQ61_RS29425 () | 53813..54088 | + | 276 | WP_015060661.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DTQ61_RS29430 () | 54250..55284 | + | 1035 | WP_057427112.1 | IS110 family transposase ISPsy16 | Transposase |
| DTQ61_RS29435 () | 55635..56105 | - | 471 | Protein_70 | IS91 family transposase ISPsy3 | Transposase |
| DTQ61_RS29445 () | 56486..58516 | - | 2031 | WP_031598378.1 | IS66 family transposase ISPsy43 | VF |
| DTQ61_RS29455 () | 59503..60588 | - | 1086 | WP_002556026.1 | DUF3616 domain-containing protein | - |
| DTQ61_RS29460 () | 60739..60960 | + | 222 | WP_004666801.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|