MGE detailed information
MGE type: Conjugative plasmid MGE length: 110420 bp
Accession: NZ_LT963410 Location: 1..110420 Organism: Pseudomonas syringae isolate CFBP3840 Replicon: plasmid PP1
Accession: NZ_LT963410 Location: 1..110420 Organism: Pseudomonas syringae isolate CFBP3840 Replicon: plasmid PP1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H39_RS28745 () | 125..481 | + | 357 | WP_024650171.1 | hypothetical protein | - |
| C6H39_RS28750 () | 529..1272 | + | 744 | Protein_2 | hypothetical protein | - |
| C6H39_RS28755 () | 1397..1669 | + | 273 | WP_104721037.1 | hypothetical protein | - |
| C6H39_RS28760 () | 1795..4206 | + | 2412 | WP_104721038.1 | ATP-binding protein | - |
| C6H39_RS28765 () | 4322..4555 | + | 234 | WP_004667999.1 | hypothetical protein | - |
| C6H39_RS28770 () | 4555..4773 | + | 219 | WP_103356816.1 | hypothetical protein | VF |
| C6H39_RS28775 () | 4770..5003 | + | 234 | WP_103356817.1 | hypothetical protein | - |
| C6H39_RS28780 () | 5003..6653 | + | 1651 | Protein_8 | type IV secretory system conjugative DNA transfer family protein | - |
| C6H39_RS28785 () | 6694..7055 | + | 362 | Protein_9 | killer protein | - |
| C6H39_RS28790 () | 7085..7483 | + | 399 | WP_143521444.1 | hypothetical protein | - |
| C6H39_RS28795 () | 7571..8122 | + | 552 | WP_095205442.1 | hypothetical protein | - |
| C6H39_RS28800 () | 8111..8830 | - | 720 | WP_146047715.1 | hypothetical protein | - |
| C6H39_RS28805 () | 8945..11107 | + | 2163 | Protein_13 | topoisomerase C-terminal repeat-containing protein | - |
| C6H39_RS28810 () | 11136..11420 | + | 285 | WP_104721040.1 | hypothetical protein | - |
| C6H39_RS28815 () | 11448..12020 | + | 573 | WP_103377081.1 | single-stranded DNA-binding protein | - |
| C6H39_RS28820 () | 12361..13080 | + | 720 | WP_060402374.1 | hypothetical protein | - |
| C6H39_RS28825 () | 13077..13649 | + | 573 | WP_002556108.1 | hypothetical protein | - |
| C6H39_RS28830 () | 13664..14053 | - | 390 | WP_015060693.1 | hypothetical protein | - |
| C6H39_RS28835 () | 14418..15143 | + | 726 | WP_104721041.1 | relaxosome protein | - |
| C6H39_RS31655 () | 15133..18906 | + | 3774 | WP_158662096.1 | hypothetical protein | Relaxase |
| C6H39_RS32115 () | 19098..19253 | + | 156 | WP_081050525.1 | hypothetical protein | - |
| C6H39_RS28860 () | 19400..19828 | + | 429 | WP_057407364.1 | GntR family transcriptional regulator | - |
| C6H39_RS28865 () | 20238..20879 | + | 642 | Protein_23 | replication initiation protein | - |
| C6H39_RS28870 () | 21084..21449 | + | 366 | WP_104721043.1 | S24 family peptidase | - |
| C6H39_RS28875 () | 21427..22506 | + | 1080 | Protein_25 | Y-family DNA polymerase | - |
| C6H39_RS28880 () | 23155..23343 | + | 189 | WP_197710717.1 | DUF4113 domain-containing protein | - |
| C6H39_RS28885 () | 23631..24170 | - | 540 | WP_044394055.1 | hypothetical protein | - |
| C6H39_RS28890 () | 24317..24802 | + | 486 | WP_044394053.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| C6H39_RS28895 () | 25328..26359 | - | 1032 | WP_044394051.1 | hypothetical protein | - |
| C6H39_RS28900 () | 26363..27358 | - | 996 | WP_104721044.1 | hypothetical protein | - |
| C6H39_RS28905 () | 27506..28147 | - | 642 | WP_065348659.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H39_RS28910 () | 28393..29205 | + | 813 | Protein_32 | ATP-dependent DNA helicase RecG | - |
| C6H39_RS28915 () | 29481..30323 | - | 843 | WP_080439351.1 | type III effector HopF2 | - |
| C6H39_RS28920 () | 30336..30731 | - | 396 | WP_005740917.1 | CesT family type III secretion system chaperone | - |
| C6H39_RS28925 () | 31072..31770 | - | 699 | WP_099456680.1 | GNAT family N-acetyltransferase | - |
| C6H39_RS28930 () | 31915..32202 | - | 288 | WP_044311061.1 | HU family DNA-binding protein | - |
| C6H39_RS28935 () | 32425..33738 | - | 1314 | WP_060402116.1 | replication initiation protein | - |
| C6H39_RS28940 () | 34136..34369 | - | 234 | WP_099456679.1 | hypothetical protein | - |
| C6H39_RS28945 () | 34386..35288 | - | 903 | WP_104721045.1 | hypothetical protein | - |
| C6H39_RS28950 () | 35479..35907 | - | 429 | WP_058886866.1 | GntR family transcriptional regulator | - |
| C6H39_RS28955 () | 36031..38040 | - | 2010 | WP_099456757.1 | hypothetical protein | - |
| C6H39_RS28960 () | 38355..38774 | - | 420 | WP_099456731.1 | hypothetical protein | - |
| C6H39_RS32205 () | 38995..39333 | + | 339 | WP_197710718.1 | hypothetical protein | - |
| C6H39_RS28975 () | 39758..40105 | - | 348 | WP_054988011.1 | hypothetical protein | Relaxase |
| C6H39_RS28980 () | 40461..40850 | + | 390 | WP_015060693.1 | hypothetical protein | - |
| C6H39_RS28985 () | 40865..41437 | - | 573 | WP_002556108.1 | hypothetical protein | - |
| C6H39_RS28990 () | 41434..42153 | - | 720 | WP_060402374.1 | hypothetical protein | - |
| C6H39_RS28995 () | 42494..43066 | - | 573 | WP_103377081.1 | single-stranded DNA-binding protein | - |
| C6H39_RS29000 () | 43094..43378 | - | 285 | WP_104721040.1 | hypothetical protein | - |
| C6H39_RS29005 () | 43407..45572 | - | 2166 | WP_103377082.1 | type IA DNA topoisomerase | - |
| C6H39_RS29010 () | 45687..46406 | + | 720 | WP_146047715.1 | hypothetical protein | - |
| C6H39_RS29015 () | 46395..46946 | - | 552 | WP_095205442.1 | hypothetical protein | - |
| C6H39_RS29020 () | 47034..47432 | - | 399 | WP_143521444.1 | hypothetical protein | - |
| C6H39_RS29025 () | 47462..47824 | - | 363 | WP_099160369.1 | killer protein | - |
| C6H39_RS29030 () | 47865..49495 | - | 1631 | Protein_55 | Protein VirD4 | VF |
| C6H39_RS29040 () | 49751..49970 | - | 220 | Protein_56 | type IV secretory system conjugative DNA transfer family protein | - |
| C6H39_RS29045 () | 49970..50203 | - | 234 | WP_004667999.1 | hypothetical protein | - |
| C6H39_RS29050 () | 50319..52749 | - | 2431 | Protein_58 | ATP-binding protein | - |
| C6H39_RS29055 () | 52875..53147 | - | 273 | WP_099456764.1 | hypothetical protein | - |
| C6H39_RS29060 () | 53194..53559 | - | 366 | WP_002556101.1 | hypothetical protein | - |
| C6H39_RS29065 () | 53544..53930 | - | 387 | WP_031598745.1 | hypothetical protein | - |
| C6H39_RS29070 () | 53940..54998 | - | 1059 | WP_104721047.1 | Type IV secretion system protein VirB11 | VF |
| C6H39_RS29075 () | 55008..56381 | - | 1374 | WP_104721048.1 | Type IV secretion system protein virB10 | VF |
| C6H39_RS29080 () | 56368..57177 | - | 810 | WP_060407406.1 | P-type conjugative transfer protein VirB9 | - |
| C6H39_RS29085 () | 57167..57956 | - | 790 | Protein_65 | type IV secretion system protein | - |
| C6H39_RS29090 () | 57994..58266 | - | 273 | WP_081080468.1 | conjugal transfer protein | - |
| C6H39_RS29095 () | 58334..59267 | - | 934 | Protein_67 | type IV secretion system protein | - |
| C6H39_RS29100 () | 59278..59631 | - | 354 | WP_104721049.1 | hypothetical protein | - |
| C6H39_RS29105 () | 59664..60311 | - | 648 | WP_104721060.1 | P-type DNA transfer protein VirB5 | - |
| C6H39_RS29110 () | 60349..62902 | - | 2554 | Protein_70 | conjugal transfer protein | - |
| C6H39_RS29115 () | 62838..63239 | - | 402 | Protein_71 | VirB3 family type IV secretion system protein | - |
| C6H39_RS29120 () | 63252..63587 | - | 336 | WP_104721061.1 | conjugal transfer protein | - |
| C6H39_RS29125 () | 63587..64294 | - | 708 | WP_104721051.1 | Type IV secretion system protein virB1 | VF |
| C6H39_RS29130 () | 64685..65332 | - | 648 | WP_019740455.1 | XRE family transcriptional regulator | - |
| C6H39_RS29140 () | 65834..66463 | + | 630 | WP_024421519.1 | Sporulation initiation inhibitor protein Soj | VF |
| C6H39_RS29145 () | 66460..66690 | + | 231 | WP_019742104.1 | hypothetical protein | - |
| C6H39_RS29150 () | 66744..67253 | - | 510 | WP_019742103.1 | GNAT family N-acetyltransferase | - |
| C6H39_RS29155 () | 67250..67531 | - | 282 | WP_019742102.1 | DUF1778 domain-containing protein | - |
| C6H39_RS29165 () | 67815..68493 | + | 679 | Protein_79 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H39_RS29170 () | 68493..68684 | + | 192 | WP_010208571.1 | hypothetical protein | - |
| C6H39_RS32120 () | 68867..69040 | + | 174 | WP_005759896.1 | hypothetical protein | - |
| C6H39_RS29175 () | 69040..69645 | + | 606 | WP_044311023.1 | hypothetical protein | - |
| C6H39_RS29180 () | 69721..69999 | - | 279 | Protein_83 | hypothetical protein | - |
| C6H39_RS29185 () | 70235..70507 | + | 273 | WP_015060662.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| C6H39_RS29190 () | 70507..70782 | + | 276 | WP_015060661.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6H39_RS29195 () | 70868..71338 | - | 471 | Protein_86 | IS91 family transposase ISPsy3 | Transposase |
| C6H39_RS29205 () | 71719..73749 | - | 2031 | WP_031598378.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| C6H39_RS29215 () | 74736..75821 | - | 1086 | WP_002556026.1 | DUF3616 domain-containing protein | - |
| C6H39_RS29220 () | 75972..76193 | + | 222 | WP_004666801.1 | hypothetical protein | - |
| C6H39_RS29225 () | 76757..77092 | - | 336 | WP_104721052.1 | hypothetical protein | - |
| C6H39_RS29240 () | 77815..78792 | + | 978 | WP_060403475.1 | IS5 family transposase IS52 | Transposase |
| C6H39_RS29245 () | 78957..80060 | - | 1104 | WP_004663854.1 | IS5 family transposase ISPsy19 | Transposase |
| C6H39_RS29250 () | 80415..81395 | - | 981 | WP_024669132.1 | IS5 family transposase ISPa26 | Transposase |
| C6H39_RS31660 () | 81417..81779 | + | 363 | WP_158662097.1 | hypothetical protein | - |
| C6H39_RS29255 () | 81827..82183 | + | 357 | WP_078983211.1 | IS66 family transposase ISPsy34 | Transposase |
| C6H39_RS29260 () | 82201..83733 | + | 1533 | WP_103365294.1 | IS66 family transposase ISPsy34 | Transposase |
| C6H39_RS29265 () | 83839..83946 | - | 108 | Protein_97 | IS5 family transposase ISPst5 | Transposase |
| C6H39_RS29275 () | 85475..86821 | + | 1347 | WP_095077770.1 | hypothetical protein | - |
| C6H39_RS29280 () | 87002..87297 | - | 296 | Protein_99 | DDE-type integrase/transposase/recombinase | - |
| C6H39_RS29285 () | 87558..87998 | + | 441 | WP_044319945.1 | hypothetical protein | - |
| C6H39_RS29290 () | 88397..88912 | + | 516 | WP_031598251.1 | GAF domain-containing protein | - |
| C6H39_RS29295 () | 89237..89656 | + | 420 | Protein_102 | hypothetical protein | - |
| C6H39_RS29300 () | 90002..90682 | + | 681 | WP_141562502.1 | hypothetical protein | - |
| C6H39_RS29305 () | 90804..91085 | + | 282 | WP_015062535.1 | hypothetical protein | - |
| C6H39_RS29310 () | 91066..92295 | + | 1230 | WP_015062536.1 | IS91 family transposase IS801 | Transposase |
| C6H39_RS29320 () | 92570..92851 | + | 282 | WP_015062535.1 | hypothetical protein | - |
| C6H39_RS29325 () | 92832..94061 | + | 1230 | WP_015062536.1 | IS91 family transposase IS801 | Transposase |
| C6H39_RS29330 () | 94240..94485 | - | 246 | Protein_108 | HU family DNA-binding protein | - |
| C6H39_RS29335 () | 94711..95442 | - | 732 | Protein_109 | primase C-terminal domain-containing protein | - |
| C6H39_RS29340 () | 95964..96617 | + | 654 | WP_015060677.1 | Iron-sulfur cluster carrier protein | VF |
| C6H39_RS29345 () | 96666..96977 | + | 312 | WP_053480882.1 | hypothetical protein | - |
| C6H39_RS29355 () | 97296..97676 | - | 381 | WP_015060680.1 | hypothetical protein | - |
| C6H39_RS29360 () | 97919..98389 | - | 471 | WP_053480883.1 | hypothetical protein | - |
| C6H39_RS29365 () | 98477..98827 | - | 351 | WP_015060682.1 | helix-turn-helix transcriptional regulator | - |
| C6H39_RS29370 () | 99091..99618 | + | 528 | WP_104721053.1 | transcriptional regulator | - |
| C6H39_RS29375 () | 99683..99898 | + | 216 | WP_004666691.1 | hypothetical protein | - |
| C6H39_RS29380 () | 99927..100634 | + | 708 | WP_104721054.1 | Type IV secretion system protein virB1 | VF |
| C6H39_RS29385 () | 100634..100969 | + | 336 | WP_104721062.1 | conjugal transfer protein | - |
| C6H39_RS29390 () | 100982..101383 | + | 402 | Protein_119 | VirB3 family type IV secretion system protein | - |
| C6H39_RS29395 () | 101319..103871 | + | 2553 | WP_173929312.1 | VirB4 family type IV secretion system protein | - |
| C6H39_RS29400 () | 103868..104548 | + | 681 | WP_104721057.1 | P-type DNA transfer protein VirB5 | - |
| C6H39_RS29405 () | 104563..104769 | + | 207 | WP_031598978.1 | hypothetical protein | - |
| C6H39_RS29410 () | 104796..105740 | + | 945 | WP_031598977.1 | type IV secretion system protein | - |
| C6H39_RS29420 () | 106149..106937 | + | 789 | WP_060404299.1 | Type IV secretion system protein virB8 | VF |
| C6H39_RS29425 () | 106927..107736 | + | 810 | WP_060407406.1 | P-type conjugative transfer protein VirB9 | - |
| C6H39_RS29430 () | 107723..109096 | + | 1374 | WP_104721048.1 | Type IV secretion system protein virB10 | VF |
| C6H39_RS29435 () | 109106..110164 | + | 1059 | WP_104721058.1 | Type IV secretion system protein VirB11 | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|