MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 41285 bp
Accession: NZ_LT963407 Location: 1..41285 Organism: Pseudomonas syringae pv. avii isolate CFBP3846 Replicon: plasmid PP5
Accession: NZ_LT963407 Location: 1..41285 Organism: Pseudomonas syringae pv. avii isolate CFBP3846 Replicon: plasmid PP5
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H38_RS31590 () | 686..1621 | - | 936 | WP_060412716.1 | syringolide biosynthetic protein AvrD1 | - |
| C6H38_RS31595 () | 1896..2511 | - | 616 | Protein_2 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H38_RS31600 () | 2552..2971 | - | 420 | WP_060412717.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| C6H38_RS31605 () | 2968..3225 | - | 258 | WP_060412719.1 | Arc family DNA-binding protein | Antitoxin Detail |
| C6H38_RS31610 () | 3593..4225 | + | 633 | WP_003381804.1 | ParA family protein | - |
| C6H38_RS31615 () | 4261..4515 | + | 255 | WP_003381801.1 | hypothetical protein | - |
| C6H38_RS31620 () | 4939..5604 | - | 666 | WP_060412718.1 | LexA family transcriptional regulator | - |
| C6H38_RS31625 () | 5692..5922 | + | 231 | WP_010215521.1 | helix-turn-helix domain-containing protein | - |
| C6H38_RS31630 () | 6273..6980 | + | 708 | WP_103724609.1 | Type IV secretion system protein virB1 | VF |
| C6H38_RS31635 () | 6980..7315 | + | 336 | WP_103724610.1 | conjugal transfer protein | - |
| C6H38_RS31640 () | 7422..8231 | - | 810 | WP_104698139.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS31645 () | 8228..9250 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS31650 () | 9401..10192 | - | 792 | Protein_13 | IS91 family transposase IS801 | Transposase |
| C6H38_RS31655 () | 10250..10930 | - | 681 | WP_141562502.1 | hypothetical protein | - |
| C6H38_RS31660 () | 11154..12131 | - | 978 | WP_103724639.1 | IS5 family transposase ISPssy | Transposase |
| C6H38_RS32380 () | 12186..12806 | - | 621 | WP_153016079.1 | hypothetical protein | - |
| C6H38_RS31665 () | 13208..13900 | + | 693 | WP_060413815.1 | NYN domain-containing protein | - |
| C6H38_RS31670 () | 13969..14946 | + | 978 | WP_020306143.1 | IS5 family transposase IS52 | Transposase |
| C6H38_RS31675 () | 15364..16584 | + | 1221 | WP_104698148.1 | hypothetical protein | - |
| C6H38_RS31680 () | 16600..16788 | + | 189 | Protein_20 | IS3 family transposase IS51 | Transposase |
| C6H38_RS32610 () | 16816..16941 | + | 126 | Protein_21 | type III chaperone protein ShcF | - |
| C6H38_RS31690 () | 17041..18082 | + | 1042 | Protein_22 | hypothetical protein | - |
| C6H38_RS31695 () | 18840..20216 | + | 1377 | WP_058886940.1 | multidrug transporter MatE | - |
| C6H38_RS31700 () | 20297..21484 | + | 1188 | WP_060410024.1 | indoleacetate--lysine synthetase | - |
| C6H38_RS31705 () | 21740..22012 | - | 273 | WP_080439281.1 | integrase | - |
| C6H38_RS31710 () | 21969..22286 | + | 318 | Protein_26 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| C6H38_RS31720 () | 22630..23494 | - | 865 | Protein_27 | IS91 family transposase IS801 | Transposase |
| C6H38_RS31725 () | 23588..24826 | + | 1239 | Protein_28 | IS91 family transposase IS801 | Transposase |
| C6H38_RS31730 () | 25008..25382 | - | 375 | Protein_29 | IS91 family transposase IS801 | Transposase |
| C6H38_RS31735 () | 25413..25799 | - | 387 | Protein_30 | hypothetical protein | - |
| C6H38_RS31740 () | 25849..26659 | - | 811 | Protein_31 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS31745 () | 26656..27678 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS31750 () | 27764..28618 | + | 855 | Protein_33 | IS91 family transposase IS801 | Transposase |
| C6H38_RS31760 () | 28812..29774 | - | 963 | WP_080439227.1 | type III effector | - |
| C6H38_RS31765 () | 30734..31480 | - | 747 | WP_044423452.1 | hypothetical protein | - |
| C6H38_RS32805 () | 31950..32177 | - | 228 | WP_015060881.1 | hypothetical protein | - |
| C6H38_RS31775 () | 32194..33096 | - | 903 | WP_104698149.1 | hypothetical protein | - |
| C6H38_RS31785 () | 33450..33878 | - | 429 | WP_060413262.1 | GntR family transcriptional regulator | - |
| C6H38_RS31790 () | 34225..34482 | - | 258 | WP_054078887.1 | transcriptional regulator | - |
| C6H38_RS31795 () | 34601..36610 | - | 2010 | WP_060413265.1 | hypothetical protein | - |
| C6H38_RS31800 () | 36925..37344 | - | 420 | WP_060413263.1 | hypothetical protein | - |
| C6H38_RS32385 () | 37705..38340 | - | 636 | WP_060413264.1 | hypothetical protein | Relaxase |
| C6H38_RS31815 () | 38330..38671 | - | 342 | Protein_43 | relaxosome protein | - |
| C6H38_RS31820 () | 38734..39714 | + | 981 | WP_060402216.1 | IS5 family transposase ISPa41 | Transposase |
| C6H38_RS31825 () | 39995..40600 | - | 606 | WP_074846093.1 | histidine phosphatase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|