MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 109843 bp
Accession: NZ_LT963404 Location: 1..109843 Organism: Pseudomonas syringae pv. avii isolate CFBP3846 Replicon: plasmid PP2
Accession: NZ_LT963404 Location: 1..109843 Organism: Pseudomonas syringae pv. avii isolate CFBP3846 Replicon: plasmid PP2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H38_RS29645 () | 25..531 | - | 507 | WP_005735352.1 | AAA family ATPase | - |
| C6H38_RS29650 () | 573..2186 | - | 1614 | WP_060402491.1 | Methyl-accepting chemotaxis protein CtpH | VF |
| C6H38_RS29655 () | 2370..2990 | - | 621 | WP_099160484.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H38_RS29660 () | 3458..3790 | + | 333 | WP_010216246.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C6H38_RS29665 () | 3792..4076 | + | 285 | WP_024421129.1 | helix-turn-helix domain-containing protein | - |
| C6H38_RS29670 () | 4229..4642 | + | 414 | WP_060402554.1 | hypothetical protein | - |
| C6H38_RS29680 () | 5188..5859 | + | 672 | WP_146050634.1 | hypothetical protein | - |
| C6H38_RS29685 () | 6334..6711 | + | 378 | WP_007247501.1 | hypothetical protein | - |
| C6H38_RS29690 () | 6758..7594 | + | 837 | WP_060402606.1 | DUF945 domain-containing protein | - |
| C6H38_RS29695 () | 7652..7840 | + | 189 | WP_005740422.1 | hypothetical protein | - |
| C6H38_RS29700 () | 7914..8192 | - | 279 | WP_032633979.1 | hypothetical protein | - |
| C6H38_RS29710 () | 8613..8942 | + | 330 | WP_060413368.1 | ribbon-helix-helix protein, CopG family | - |
| C6H38_RS29715 () | 8953..10908 | + | 1956 | WP_104698135.1 | hypothetical protein | Relaxase |
| C6H38_RS29730 () | 11617..12846 | - | 1230 | WP_104698136.1 | IS91 family transposase IS801 | Transposase |
| C6H38_RS29735 () | 12827..13108 | - | 282 | WP_015062535.1 | hypothetical protein | - |
| C6H38_RS29740 () | 13217..13510 | - | 294 | Protein_15 | IS91 family transposase IS801 | Transposase |
| C6H38_RS29745 () | 13712..15226 | + | 1515 | WP_005740312.1 | IS21 family transposase ISPsy14 | Transposase |
| C6H38_RS29750 () | 15247..16002 | + | 756 | WP_060402572.1 | IS21 family transposase ISPsy40 | Transposase |
| C6H38_RS32595 () | 16090..16380 | + | 291 | WP_060412696.1 | IS91 family transposase IS801 | Transposase |
| C6H38_RS29760 () | 16480..16803 | + | 324 | WP_024639051.1 | phage holin, lambda family | - |
| C6H38_RS29765 () | 16800..17219 | + | 420 | WP_060412695.1 | hypothetical protein | - |
| C6H38_RS29770 () | 17248..18873 | - | 1626 | WP_060412694.1 | hypothetical protein | VF |
| C6H38_RS29775 () | 19304..22330 | - | 3027 | WP_060414435.1 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| C6H38_RS29780 () | 22320..22916 | - | 597 | WP_057425230.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| C6H38_RS32600 () | 23233..23763 | - | 531 | WP_005752338.1 | hypothetical protein | - |
| C6H38_RS29790 () | 24480..25157 | - | 678 | Protein_25 | IS91 family transposase IS801 | Transposase |
| C6H38_RS29795 () | 25138..25419 | - | 282 | WP_060402791.1 | hypothetical protein | - |
| C6H38_RS29810 () | 25920..27152 | - | 1233 | WP_104698134.1 | IS91 family transposase IS801 | Transposase |
| C6H38_RS29815 () | 27277..27882 | + | 606 | WP_060403786.1 | T3SS effector protein kinase HopBF1 | - |
| C6H38_RS29830 () | 28942..29751 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS29835 () | 29748..30770 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS29840 () | 30863..31168 | - | 306 | WP_060412681.1 | hypothetical protein | - |
| C6H38_RS29845 () | 31271..31786 | - | 516 | WP_060412682.1 | hypothetical protein | - |
| C6H38_RS29850 () | 32172..33044 | - | 873 | WP_060412683.1 | DUF3800 domain-containing protein | - |
| C6H38_RS29855 () | 33171..33401 | - | 231 | WP_060412684.1 | hypothetical protein | - |
| C6H38_RS29860 () | 33597..33806 | - | 210 | WP_060412685.1 | hypothetical protein | - |
| C6H38_RS29870 () | 34127..34564 | - | 438 | WP_060412687.1 | hypothetical protein | - |
| C6H38_RS29875 () | 34668..34847 | - | 180 | WP_060412688.1 | hypothetical protein | - |
| C6H38_RS29885 () | 35338..35796 | - | 459 | WP_080439229.1 | hypothetical protein | - |
| C6H38_RS29890 () | 35892..36101 | - | 210 | WP_060412692.1 | hypothetical protein | - |
| C6H38_RS29905 () | 36906..37802 | - | 897 | WP_057431891.1 | hypothetical protein | - |
| C6H38_RS29910 () | 38241..39212 | - | 972 | WP_044320632.1 | ExeA family protein | - |
| C6H38_RS29915 () | 39202..40860 | - | 1659 | WP_060412693.1 | IS481 family transposase ISAzs36 | Transposase |
| C6H38_RS29925 () | 41238..41862 | - | 625 | Protein_43 | glycoside hydrolase family 25 protein | - |
| C6H38_RS29930 () | 42659..43840 | - | 1182 | WP_004662960.1 | glycoside hydrolase family 10 protein | - |
| C6H38_RS29935 () | 43925..45220 | - | 1296 | WP_104698137.1 | glycoside hydrolase family 68 protein | - |
| C6H38_RS29940 () | 45232..45417 | - | 186 | WP_080439474.1 | Com family DNA-binding transcriptional regulator | - |
| C6H38_RS29950 () | 45912..47861 | - | 1950 | WP_103724618.1 | hypothetical protein | VF |
| C6H38_RS29960 () | 48478..49179 | + | 702 | WP_060414152.1 | FadR family transcriptional regulator | - |
| C6H38_RS29965 () | 49249..50465 | + | 1217 | Protein_49 | L-2-hydroxyglutarate oxidase | - |
| C6H38_RS29970 () | 50491..51837 | + | 1347 | WP_060414150.1 | MHS family MFS transporter | - |
| C6H38_RS29975 () | 51878..52063 | + | 186 | WP_003344336.1 | hypothetical protein | - |
| C6H38_RS29980 () | 52085..52468 | - | 384 | WP_003344338.1 | helix-turn-helix domain-containing protein | - |
| C6H38_RS29985 () | 52682..53215 | + | 534 | WP_060414149.1 | transcriptional regulator | - |
| C6H38_RS29990 () | 53304..53513 | + | 210 | WP_005622143.1 | hypothetical protein | - |
| C6H38_RS30000 () | 53806..54297 | + | 492 | WP_005740400.1 | hypothetical protein | VF |
| C6H38_RS30005 () | 54334..54807 | + | 474 | WP_024419790.1 | DotD/TraH family lipoprotein | - |
| C6H38_RS30010 () | 54804..55604 | + | 801 | WP_007247253.1 | hypothetical protein | VF |
| C6H38_RS30015 () | 55601..56779 | + | 1179 | WP_060414147.1 | hypothetical protein | VF |
| C6H38_RS30020 () | 56811..57044 | + | 234 | WP_053480957.1 | hypothetical protein | - |
| C6H38_RS30025 () | 57082..57330 | + | 249 | WP_024419793.1 | hypothetical protein | - |
| C6H38_RS32320 () | 57323..57535 | + | 213 | WP_103379303.1 | hypothetical protein | - |
| C6H38_RS30030 () | 57587..58087 | + | 501 | Protein_62 | phospholipase D family protein | - |
| C6H38_RS30035 () | 58125..58368 | + | 244 | Protein_63 | hypothetical protein | - |
| C6H38_RS30045 () | 58734..61553 | + | 2820 | Protein_64 | DNA primase | - |
| C6H38_RS30050 () | 61602..62411 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30055 () | 62408..63430 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30060 () | 63516..65144 | + | 1629 | Protein_67 | DNA primase | - |
| C6H38_RS30065 () | 65170..65523 | + | 354 | WP_060412804.1 | hypothetical protein | - |
| C6H38_RS30070 () | 65520..66227 | + | 708 | WP_060412805.1 | DotI/IcmL/TraM family protein | - |
| C6H38_RS30075 () | 66284..67342 | + | 1059 | WP_080439249.1 | hypothetical protein | VF |
| C6H38_RS30080 () | 67348..68706 | + | 1359 | WP_060412807.1 | conjugal transfer protein TraO | - |
| C6H38_RS30085 () | 68703..69413 | + | 711 | WP_060412808.1 | conjugal transfer protein TraP | - |
| C6H38_RS30090 () | 69422..69964 | + | 543 | WP_060412809.1 | conjugal transfer protein TraQ | - |
| C6H38_RS30095 () | 70040..70435 | + | 396 | WP_054070272.1 | hypothetical protein | VF |
| C6H38_RS30100 () | 70479..70754 | - | 276 | WP_054072925.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C6H38_RS30105 () | 70732..70932 | - | 201 | WP_002556012.1 | hypothetical protein | - |
| C6H38_RS30110 () | 71117..71776 | + | 660 | WP_060412810.1 | hypothetical protein | - |
| C6H38_RS30115 () | 71751..74807 | + | 3057 | WP_060412811.1 | conjugal transfer protein | - |
| C6H38_RS30120 () | 74831..75067 | + | 237 | WP_024420285.1 | hypothetical protein | - |
| C6H38_RS30125 () | 75110..76324 | + | 1215 | WP_004666881.1 | conjugal transfer protein TraW | - |
| C6H38_RS30130 () | 76314..76916 | + | 603 | WP_024420284.1 | conjugal transfer protein TraX | - |
| C6H38_RS30135 () | 76947..79091 | + | 2145 | WP_060412812.1 | DotA/TraY family protein | - |
| C6H38_RS30140 () | 79195..79440 | + | 246 | WP_003344389.1 | hypothetical protein | - |
| C6H38_RS30145 () | 79437..80084 | + | 648 | WP_024670621.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C6H38_RS30150 () | 80177..81376 | + | 1200 | WP_060412813.1 | hypothetical protein | - |
| C6H38_RS30155 () | 81462..82547 | + | 1086 | WP_060412814.1 | thioredoxin fold domain-containing protein | - |
| C6H38_RS30160 () | 82534..84822 | + | 2289 | WP_104698138.1 | type IV secretory system conjugative DNA transfer family protein | - |
| C6H38_RS30165 () | 84900..85328 | + | 429 | WP_011107000.1 | GntR family transcriptional regulator | - |
| C6H38_RS30170 () | 85738..87051 | + | 1314 | WP_060412816.1 | replication initiation protein | - |
| C6H38_RS30175 () | 87235..87549 | + | 315 | WP_060412817.1 | HU family DNA-binding protein | - |
| C6H38_RS30180 () | 87815..88963 | + | 1149 | WP_031598959.1 | ImmA/IrrE family metallo-endopeptidase | - |
| C6H38_RS30185 () | 88950..89291 | + | 342 | Protein_92 | DUF4411 family protein | - |
| C6H38_RS30190 () | 89335..90144 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30195 () | 90141..91163 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30205 () | 91656..91811 | + | 156 | WP_096060180.1 | DUF1508 domain-containing protein | - |
| C6H38_RS30215 () | 92101..92790 | - | 690 | Protein_96 | IS91 family transposase IS801 | Transposase |
| C6H38_RS30225 () | 93626..93850 | + | 225 | WP_044311068.1 | carbon storage regulator | - |
| C6H38_RS30230 () | 93934..95481 | + | 1548 | WP_060412996.1 | glycoside hydrolase family 28 protein | - |
| C6H38_RS30235 () | 95507..95635 | + | 129 | Protein_99 | DUF4113 domain-containing protein | - |
| C6H38_RS30245 () | 96004..96402 | - | 399 | Protein_100 | IS91 family transposase IS801 | Transposase |
| C6H38_RS30250 () | 96790..97123 | - | 334 | Protein_101 | IS91 family transposase IS801 | Transposase |
| C6H38_RS30255 () | 97168..97881 | - | 714 | WP_044311048.1 | UPF0149 family protein | - |
| C6H38_RS30260 () | 97985..98257 | - | 273 | WP_003348606.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6H38_RS30265 () | 98247..98432 | - | 186 | WP_005730485.1 | hypothetical protein | Antitoxin Detail |
| C6H38_RS30270 () | 98483..98761 | - | 279 | WP_003320513.1 | hypothetical protein | - |
| C6H38_RS30275 () | 98854..99489 | - | 636 | WP_103724617.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H38_RS30280 () | 99745..101300 | + | 1556 | WP_103724633.1 | IS3 family transposase IS1240 | Transposase |
| C6H38_RS30290 () | 101869..102350 | + | 482 | Protein_108 | IS3 family transposase ISPsy24 | Transposase |
| C6H38_RS30295 () | 102456..103211 | - | 756 | WP_060402572.1 | IS21 family transposase ISPsy40 | Transposase |
| C6H38_RS30300 () | 103232..104746 | - | 1515 | WP_005740312.1 | IS21 family transposase ISPsy14 | Transposase |
| C6H38_RS30305 () | 104943..105635 | + | 693 | Protein_111 | IS3 family transposase ISPsy24 | Transposase |
| C6H38_RS30310 () | 105764..106045 | - | 282 | WP_004666803.1 | hypothetical protein | - |
| C6H38_RS30315 () | 106045..106728 | - | 684 | WP_057456119.1 | AAA family ATPase | - |
| C6H38_RS30320 () | 106946..107968 | + | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30325 () | 107965..108774 | + | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30330 () | 108823..109206 | - | 384 | Protein_116 | IS91 family transposase IS801 | Transposase |
| C6H38_RS30340 () | 109654..109788 | + | 135 | Protein_117 | IS5/IS1182 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|