MGE detailed information
MGE type: Conjugative plasmid MGE length: 144075 bp
Accession: NZ_LT963397 Location: 1..144075 Organism: Pseudomonas cerasi isolate PL963 Replicon: plasmid PP2
Accession: NZ_LT963397 Location: 1..144075 Organism: Pseudomonas cerasi isolate PL963 Replicon: plasmid PP2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H34_RS28010 () | 462..704 | - | 243 | WP_057443007.1 | hypothetical protein | - |
| C6H34_RS28015 () | 793..1326 | - | 534 | WP_057443006.1 | transcriptional regulator | - |
| C6H34_RS30830 () | 1343..1582 | - | 240 | WP_157893874.1 | hypothetical protein | - |
| C6H34_RS28020 () | 1581..1910 | + | 330 | WP_044424053.1 | helix-turn-helix domain-containing protein | - |
| C6H34_RS28025 () | 1917..2321 | - | 405 | WP_162273802.1 | hypothetical protein | - |
| C6H34_RS28030 () | 2379..3725 | - | 1347 | WP_065348655.1 | MHS family MFS transporter | - |
| C6H34_RS28035 () | 3766..4962 | - | 1197 | WP_065348656.1 | L-2-hydroxyglutarate oxidase | - |
| C6H34_RS28040 () | 5039..5740 | - | 702 | WP_010217228.1 | FadR family transcriptional regulator | - |
| C6H34_RS28045 () | 6228..6518 | - | 291 | WP_003344250.1 | hypothetical protein | - |
| C6H34_RS28050 () | 6599..7249 | - | 651 | WP_065348657.1 | ParA family protein | - |
| C6H34_RS31215 () | 8244..8696 | + | 453 | WP_169338192.1 | type III effector HopAB2 | - |
| C6H34_RS28060 () | 8879..9547 | + | 669 | WP_065348721.1 | hypothetical protein | - |
| C6H34_RS28065 () | 9742..9966 | - | 225 | WP_065348722.1 | hypothetical protein | - |
| C6H34_RS28070 () | 10001..10471 | - | 471 | WP_024421059.1 | putative addiction module antidote protein | - |
| C6H34_RS28075 () | 10468..10788 | - | 321 | WP_032616419.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C6H34_RS28080 () | 10888..11349 | - | 462 | WP_083188296.1 | DUF4113 domain-containing protein | - |
| C6H34_RS28085 () | 11597..12106 | + | 510 | Protein_17 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H34_RS28090 () | 12455..13432 | - | 978 | WP_065348561.1 | IS5 family transposase ISPssy | Transposase |
| C6H34_RS28095 () | 13550..14692 | + | 1143 | WP_065348723.1 | IQ calmodulin-binding motif-containing protein | - |
| C6H34_RS28100 () | 15054..16601 | - | 1548 | WP_065348726.1 | glycoside hydrolase family 28 protein | - |
| C6H34_RS28105 () | 16685..16909 | - | 225 | WP_044311011.1 | carbon storage regulator | - |
| C6H34_RS28115 () | 17635..18906 | - | 1272 | WP_157893881.1 | hypothetical protein | - |
| C6H34_RS28130 () | 19152..19625 | - | 474 | WP_074800939.1 | DUF3757 domain-containing protein | - |
| C6H34_RS28135 () | 19832..21061 | + | 1230 | WP_080336767.1 | IS91 family transposase ISPsy3 | Transposase |
| C6H34_RS28140 () | 21930..22325 | + | 396 | WP_005740917.1 | CesT family type III secretion system chaperone | - |
| C6H34_RS28145 () | 22338..23180 | + | 843 | WP_083188297.1 | type III effector HopF2 | - |
| C6H34_RS28150 () | 23456..24613 | - | 1158 | WP_005740916.1 | putative DNA binding domain-containing protein | - |
| C6H34_RS28155 () | 24595..27261 | - | 2667 | WP_005740914.1 | hypothetical protein | - |
| C6H34_RS28160 () | 27404..27769 | - | 366 | Protein_29 | MobA/MobL family protein | - |
| C6H34_RS28165 () | 27808..28080 | - | 273 | WP_015060672.1 | hypothetical protein | - |
| C6H34_RS30835 () | 28234..28491 | + | 258 | WP_157893878.1 | hypothetical protein | - |
| C6H34_RS28175 () | 28799..29080 | + | 282 | WP_060402791.1 | hypothetical protein | - |
| C6H34_RS28180 () | 29061..30290 | + | 1230 | WP_065348575.1 | IS91 family transposase IS801 | Transposase |
| C6H34_RS28190 () | 30543..30800 | + | 258 | WP_003381346.1 | Arc family DNA-binding protein | Antitoxin Detail |
| C6H34_RS28195 () | 30797..31216 | + | 420 | WP_060402639.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| C6H34_RS28200 () | 31257..31889 | + | 633 | WP_103750722.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H34_RS28210 () | 32427..40841 | + | 8415 | WP_104685814.1 | type III effector protein XopAD | - |
| C6H34_RS28215 () | 40943..41224 | + | 282 | WP_060402791.1 | hypothetical protein | - |
| C6H34_RS28220 () | 41205..42434 | + | 1230 | WP_065348575.1 | IS91 family transposase IS801 | Transposase |
| C6H34_RS28230 () | 42709..42990 | + | 282 | WP_065348597.1 | hypothetical protein | - |
| C6H34_RS28235 () | 42971..44200 | + | 1230 | WP_104685815.1 | IS91 family transposase IS801 | Transposase |
| C6H34_RS28245 () | 44447..44863 | - | 417 | WP_005619498.1 | hypothetical protein | - |
| C6H34_RS28250 () | 45023..46336 | - | 1314 | WP_065348665.1 | replication initiation protein | - |
| C6H34_RS28255 () | 46883..47236 | - | 354 | WP_024421270.1 | hypothetical protein | - |
| C6H34_RS28260 () | 47227..47877 | - | 651 | WP_005730296.1 | AAA family ATPase | - |
| C6H34_RS28265 () | 48035..48463 | - | 429 | WP_024421269.1 | GntR family transcriptional regulator | - |
| C6H34_RS31335 () | 48591..49697 | - | 1107 | Protein_47 | relaxase | - |
| C6H34_RS31220 () | 49686..50948 | - | 1263 | Protein_48 | relaxase | - |
| C6H34_RS28275 () | 51200..52009 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H34_RS28280 () | 52006..53028 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H34_RS28285 () | 53106..54647 | - | 1542 | Protein_51 | hypothetical protein | Relaxase |
| C6H34_RS28290 () | 54637..55362 | - | 726 | WP_065348667.1 | relaxosome protein | - |
| C6H34_RS28295 () | 55727..56116 | + | 390 | WP_020304529.1 | hypothetical protein | - |
| C6H34_RS28300 () | 56131..56703 | - | 573 | WP_024647985.1 | hypothetical protein | - |
| C6H34_RS28305 () | 56700..57419 | - | 720 | WP_065348668.1 | plasmid stability protein StbB | - |
| C6H34_RS28310 () | 57758..58318 | - | 561 | WP_065348669.1 | single-stranded DNA-binding protein | - |
| C6H34_RS28315 () | 58345..58629 | - | 285 | WP_065348670.1 | hypothetical protein | - |
| C6H34_RS28320 () | 58656..60821 | - | 2166 | WP_065348671.1 | type IA DNA topoisomerase | - |
| C6H34_RS28325 () | 60865..61746 | + | 882 | WP_065348672.1 | hypothetical protein | - |
| C6H34_RS30845 () | 61648..62046 | - | 399 | WP_060402378.1 | hypothetical protein | - |
| C6H34_RS28330 () | 62076..62438 | - | 363 | WP_060407412.1 | killer protein | - |
| C6H34_RS28335 () | 62479..64152 | - | 1674 | WP_065348673.1 | type IV secretory system conjugative DNA transfer family protein | - |
| C6H34_RS28340 () | 64152..64385 | - | 234 | WP_053486459.1 | hypothetical protein | - |
| C6H34_RS28345 () | 64382..64600 | - | 219 | WP_065348674.1 | hypothetical protein | VF |
| C6H34_RS28350 () | 64600..64830 | - | 231 | WP_065348622.1 | hypothetical protein | - |
| C6H34_RS28355 () | 64917..67307 | - | 2391 | WP_065348648.1 | ATP-binding protein | - |
| C6H34_RS28360 () | 67433..67705 | - | 273 | WP_044324439.1 | hypothetical protein | - |
| C6H34_RS28365 () | 67752..68117 | - | 366 | WP_004667995.1 | hypothetical protein | - |
| C6H34_RS28370 () | 68102..68488 | - | 387 | WP_065348624.1 | hypothetical protein | - |
| C6H34_RS28375 () | 68502..69554 | - | 1053 | WP_065348625.1 | Type IV secretion system protein VirB11 | VF |
| C6H34_RS28380 () | 69564..70945 | - | 1382 | Protein_71 | TrbI/VirB10 family protein | - |
| C6H34_RS28385 () | 70932..71741 | - | 810 | WP_065348627.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| C6H34_RS28390 () | 71731..72519 | - | 789 | WP_065348628.1 | Type IV secretion system protein virB8 | VF |
| C6H34_RS28400 () | 72927..73859 | - | 933 | WP_065348629.1 | type IV secretion system protein | - |
| C6H34_RS28405 () | 73870..74235 | - | 366 | WP_065348652.1 | hypothetical protein | - |
| C6H34_RS28410 () | 74268..74954 | - | 687 | WP_057424700.1 | P-type DNA transfer protein VirB5 | - |
| C6H34_RS28415 () | 74951..77503 | - | 2553 | WP_173926109.1 | conjugal transfer protein | - |
| C6H34_RS28420 () | 77439..77840 | - | 402 | Protein_78 | VirB3 family type IV secretion system protein | - |
| C6H34_RS28425 () | 77853..78188 | - | 336 | WP_020325459.1 | hypothetical protein | - |
| C6H34_RS28430 () | 78188..78895 | - | 708 | WP_065348654.1 | Type IV secretion system protein virB1 | VF |
| C6H34_RS28435 () | 78923..79135 | - | 213 | WP_031599400.1 | hypothetical protein | - |
| C6H34_RS28440 () | 79224..79757 | - | 534 | WP_031598405.1 | transcriptional regulator | - |
| C6H34_RS30850 () | 79829..79996 | + | 168 | WP_157893872.1 | hypothetical protein | - |
| C6H34_RS28445 () | 80000..80353 | + | 354 | WP_003319387.1 | helix-turn-helix domain-containing protein | - |
| C6H34_RS28450 () | 80370..80555 | - | 186 | WP_065348634.1 | hypothetical protein | - |
| C6H34_RS28455 () | 80611..81957 | - | 1347 | WP_083188280.1 | MFS transporter | - |
| C6H34_RS28460 () | 81999..83195 | - | 1197 | WP_065348636.1 | L-2-hydroxyglutarate oxidase | - |
| C6H34_RS28465 () | 83271..83972 | - | 702 | WP_065348637.1 | FadR family transcriptional regulator | - |
| C6H34_RS31340 () | 84219..84359 | + | 141 | Protein_89 | IS21 family transposase ISRso19 | Transposase |
| C6H34_RS28480 () | 84805..85017 | - | 213 | WP_031598413.1 | hypothetical protein | - |
| C6H34_RS28485 () | 85017..85628 | - | 612 | WP_054988361.1 | Protein virC1 | VF |
| C6H34_RS28490 () | 86245..86880 | + | 636 | WP_065348638.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H34_RS28495 () | 86975..87247 | + | 273 | WP_065348639.1 | arylsulfatase regulator | - |
| C6H34_RS28500 () | 87408..87809 | + | 402 | WP_044310948.1 | hypothetical protein | - |
| C6H34_RS28505 () | 87803..88501 | + | 699 | WP_044310949.1 | RES family NAD+ phosphorylase | - |
| C6H34_RS28510 () | 88870..89478 | + | 609 | WP_065348640.1 | AAA family ATPase | - |
| C6H34_RS30855 () | 89455..89619 | - | 165 | WP_004666862.1 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| C6H34_RS28515 () | 89775..90440 | - | 666 | WP_032641726.1 | hypothetical protein | - |
| C6H34_RS28525 () | 91180..91740 | + | 561 | WP_005737570.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| C6H34_RS28530 () | 91744..94710 | + | 2967 | WP_060402558.1 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| C6H34_RS28535 () | 94752..96353 | + | 1602 | WP_083188283.1 | AAA family ATPase | - |
| C6H34_RS28540 () | 96511..97311 | - | 801 | WP_065348642.1 | hypothetical protein | - |
| C6H34_RS28545 () | 97373..98452 | - | 1080 | WP_083188284.1 | restriction endonuclease | - |
| C6H34_RS28550 () | 98452..100248 | - | 1797 | WP_005620864.1 | type I restriction-modification system subunit M | - |
| C6H34_RS28555 () | 100675..101130 | + | 456 | Protein_105 | hypothetical protein | - |
| C6H34_RS28560 () | 101179..101988 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H34_RS28565 () | 101985..103007 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H34_RS30860 () | 103245..103385 | + | 141 | WP_157893873.1 | hypothetical protein | - |
| C6H34_RS28575 () | 103606..103881 | - | 276 | WP_065348644.1 | bacteriocin immunity protein | - |
| C6H34_RS28580 () | 103883..105853 | - | 1971 | WP_083188285.1 | S-type pyocin domain-containing protein | - |
| C6H34_RS28595 () | 106340..107119 | + | 780 | WP_083188286.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| C6H34_RS28600 () | 107146..108519 | - | 1374 | WP_060413324.1 | hypothetical protein | - |
| C6H34_RS30865 () | 108901..109569 | + | 669 | WP_060413323.1 | restriction endonuclease | - |
| C6H34_RS31345 () | 109585..110129 | + | 545 | Protein_114 | IS3 family transposase ISPsy28 | Transposase |
| C6H34_RS28605 () | 110124..111703 | + | 1580 | Protein_115 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| C6H34_RS28620 () | 112139..112432 | - | 294 | WP_044425124.1 | HU family DNA-binding protein | - |
| C6H34_RS28625 () | 112616..113929 | - | 1314 | WP_065348647.1 | replication initiation protein | - |
| C6H34_RS28630 () | 114339..114767 | - | 429 | WP_060409988.1 | GntR family transcriptional regulator | - |
| C6H34_RS31350 () | 114893..115999 | - | 1107 | Protein_119 | hypothetical protein | Relaxase |
| C6H34_RS31225 () | 115988..117250 | - | 1263 | Protein_120 | hypothetical protein | Relaxase |
| C6H34_RS28640 () | 117565..117990 | - | 426 | WP_065348611.1 | hypothetical protein | Relaxase |
| C6H34_RS28645 () | 118211..118486 | + | 276 | WP_065348612.1 | hypothetical protein | Relaxase |
| C6H34_RS28655 () | 118977..119327 | - | 351 | WP_002556109.1 | hypothetical protein | Relaxase |
| C6H34_RS31355 () | 119725..120132 | + | 408 | WP_004666948.1 | hypothetical protein | - |
| C6H34_RS28665 () | 120247..121224 | + | 978 | WP_065348561.1 | IS5 family transposase ISPssy | Transposase |
| C6H34_RS28670 () | 121359..121985 | - | 627 | WP_065348614.1 | hypothetical protein | - |
| C6H34_RS28675 () | 121978..122847 | - | 870 | WP_004662055.1 | hypothetical protein | - |
| C6H34_RS28685 () | 123314..124225 | - | 912 | WP_157893870.1 | hypothetical protein | - |
| C6H34_RS30875 () | 124209..124448 | - | 240 | WP_157893871.1 | hypothetical protein | - |
| C6H34_RS28690 () | 124532..125137 | - | 606 | WP_065348617.1 | single-stranded DNA-binding protein | - |
| C6H34_RS28695 () | 125165..125449 | - | 285 | WP_065348618.1 | hypothetical protein | - |
| C6H34_RS28700 () | 125477..127642 | - | 2166 | WP_065348619.1 | type IA DNA topoisomerase | - |
| C6H34_RS28705 () | 127670..128032 | - | 363 | WP_065348620.1 | killer protein | - |
| C6H34_RS28710 () | 128073..129725 | - | 1653 | WP_065348621.1 | Conjugal transfer protein TraG | VF |
| C6H34_RS28715 () | 129725..129958 | - | 234 | WP_044422741.1 | hypothetical protein | - |
| C6H34_RS28720 () | 129955..130173 | - | 219 | WP_054082419.1 | hypothetical protein | VF |
| C6H34_RS28725 () | 130173..130403 | - | 231 | WP_065348622.1 | hypothetical protein | - |
| C6H34_RS28730 () | 130521..132938 | - | 2418 | WP_104685817.1 | ATP-binding protein | - |
| C6H34_RS28735 () | 133064..133336 | - | 273 | WP_044324439.1 | hypothetical protein | - |
| C6H34_RS28740 () | 133383..133748 | - | 366 | WP_004667995.1 | hypothetical protein | - |
| C6H34_RS28745 () | 133733..134119 | - | 387 | WP_065348624.1 | hypothetical protein | - |
| C6H34_RS28750 () | 134133..135185 | - | 1053 | WP_065348625.1 | Type IV secretion system protein VirB11 | VF |
| C6H34_RS28755 () | 135195..136574 | - | 1380 | WP_104685819.1 | Type IV secretion system protein virB10 | VF |
| C6H34_RS28760 () | 136561..137370 | - | 810 | WP_065348627.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| C6H34_RS28765 () | 137360..138148 | - | 789 | WP_065348628.1 | Type IV secretion system protein virB8 | VF |
| C6H34_RS28775 () | 138556..139488 | - | 933 | WP_065348629.1 | type IV secretion system protein | - |
| C6H34_RS28780 () | 139499..139864 | - | 366 | WP_065348652.1 | hypothetical protein | - |
| C6H34_RS28785 () | 139897..140583 | - | 687 | WP_057424700.1 | P-type DNA transfer protein VirB5 | - |
| C6H34_RS28790 () | 140580..143132 | - | 2553 | WP_173926109.1 | conjugal transfer protein | - |
| C6H34_RS28795 () | 143068..143469 | - | 402 | Protein_150 | VirB3 family type IV secretion system protein | - |
| C6H34_RS28800 () | 143482..143817 | - | 336 | WP_020325459.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|