MGE detailed information
MGE type: Conjugative plasmid MGE length: 122332 bp
Accession: NZ_LT960615 Location: 1..122332 Organism: Hartmannibacter diazotrophicus strain E19T Replicon: plasmid HDIAp1
Accession: NZ_LT960615 Location: 1..122332 Organism: Hartmannibacter diazotrophicus strain E19T Replicon: plasmid HDIAp1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HDIA_RS24510 () | 40..1393 | + | 1354 | Protein_1 | LLM class flavin-dependent oxidoreductase | - |
| HDIA_RS24515 () | 1407..2240 | + | 834 | WP_099559149.1 | ABC transporter permease | - |
| HDIA_RS24520 () | 2274..3254 | + | 981 | WP_099559150.1 | ABC transporter substrate-binding protein | - |
| HDIA_RS24525 () | 3265..4035 | + | 771 | WP_099559151.1 | Aliphatic sulfonates import ATP-binding protein SsuB | VF |
| HDIA_RS24530 () | 4209..5984 | - | 1776 | WP_099559152.1 | SLC13 family permease | - |
| HDIA_RS24535 () | 6109..7617 | + | 1509 | WP_099559153.1 | murein biosynthesis integral membrane protein MurJ | - |
| HDIA_RS24540 () | 7728..8522 | - | 795 | WP_099558940.1 | IS21 family transposase ISRsp3 | Transposase |
| HDIA_RS24545 () | 8512..10044 | - | 1533 | WP_099556965.1 | IS21 family transposase ISRsp3 | Transposase |
| HDIA_RS25620 () | 10095..10301 | + | 207 | Protein_9 | DUF1738 domain-containing protein | - |
| HDIA_RS25625 () | 10524..10929 | + | 406 | Protein_10 | hypothetical protein | - |
| HDIA_RS24565 () | 11569..11886 | + | 318 | WP_099559154.1 | DUF736 domain-containing protein | - |
| HDIA_RS24570 () | 11955..12221 | - | 267 | WP_099559237.1 | WGR domain-containing protein | - |
| HDIA_RS24575 () | 12302..14218 | - | 1917 | WP_099559155.1 | hypothetical protein | VF |
| HDIA_RS24580 () | 14205..14420 | - | 216 | WP_099559156.1 | conjugal transfer protein TraD | - |
| HDIA_RS24585 () | 14425..14688 | - | 264 | WP_099559157.1 | TraC family protein | - |
| HDIA_RS24590 () | 15027..18338 | + | 3312 | WP_099559158.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| HDIA_RS24595 () | 18335..18865 | + | 531 | WP_099559159.1 | conjugative transfer signal peptidase TraF | - |
| HDIA_RS24600 () | 18819..20009 | + | 1191 | WP_099559160.1 | conjugal transfer protein TraB | - |
| HDIA_RS25525 () | 20154..20312 | + | 159 | WP_157775821.1 | hypothetical protein | - |
| HDIA_RS24605 () | 20334..21472 | + | 1139 | WP_099554957.1 | IS3 family transposase ISMex7 | Transposase |
| HDIA_RS25530 () | 21839..22441 | - | 603 | WP_157775822.1 | sel1 repeat family protein | - |
| HDIA_RS24610 () | 22707..23051 | - | 345 | WP_157775823.1 | hypothetical protein | - |
| HDIA_RS25535 () | 23123..23722 | - | 600 | WP_157775824.1 | sel1 repeat family protein | - |
| HDIA_RS24615 () | 23709..28301 | - | 4593 | WP_099559162.1 | peptidase C39 | - |
| HDIA_RS24620 () | 28368..28643 | - | 276 | WP_099559163.1 | RHS repeat protein | - |
| HDIA_RS25540 () | 28792..29805 | + | 1014 | WP_157775825.1 | hypothetical protein | - |
| HDIA_RS24625 () | 29961..30260 | - | 300 | WP_099559164.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HDIA_RS24630 () | 30257..30520 | - | 264 | WP_099559238.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HDIA_RS25545 () | 30704..31139 | - | 436 | Protein_29 | type IV secretory system conjugative DNA transfer family protein | - |
| HDIA_RS24640 () | 31298..31960 | + | 663 | WP_157775826.1 | putative transcriptional activator protein TraR | VF |
| HDIA_RS24645 () | 32262..32591 | + | 330 | WP_099559166.1 | hypothetical protein | - |
| HDIA_RS24650 () | 32752..34115 | + | 1364 | WP_099559167.1 | IS3 family transposase ISPko4 | Transposase |
| HDIA_RS24655 () | 34282..35925 | - | 1644 | WP_099559168.1 | Glutathione import ATP-binding protein GsiA | VF |
| HDIA_RS24660 () | 35922..36842 | - | 921 | WP_099559239.1 | ABC transporter permease | - |
| HDIA_RS24665 () | 36848..37768 | - | 921 | WP_099559169.1 | ABC transporter permease | - |
| HDIA_RS24670 () | 37886..39397 | - | 1512 | WP_099559170.1 | peptide ABC transporter substrate-binding protein | - |
| HDIA_RS24675 () | 39521..40453 | - | 933 | WP_099559171.1 | 5-dehydro-4-deoxyglucarate dehydratase | - |
| HDIA_RS24680 () | 40523..41299 | - | 777 | WP_099559172.1 | FadR family transcriptional regulator | - |
| HDIA_RS24685 () | 41480..43012 | + | 1533 | WP_099559240.1 | aldehyde dehydrogenase (NADP(+)) | - |
| HDIA_RS24690 () | 43191..43710 | - | 520 | Protein_40 | IS3 family transposase ISXau3 | Transposase |
| HDIA_RS24695 () | 44184..44447 | + | 264 | WP_157775827.1 | ArsR family transcriptional regulator | - |
| HDIA_RS24700 () | 44560..45450 | - | 891 | WP_099559174.1 | LysR family transcriptional regulator | - |
| HDIA_RS24705 () | 45605..46354 | + | 750 | WP_099559175.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| HDIA_RS24710 () | 46426..47271 | + | 846 | WP_099559176.1 | transketolase | - |
| HDIA_RS24715 () | 47268..48278 | + | 1011 | WP_099559177.1 | transketolase family protein | - |
| HDIA_RS24720 () | 48439..49455 | + | 1017 | WP_173796361.1 | TRAP transporter substrate-binding protein | - |
| HDIA_RS24725 () | 49452..50021 | + | 570 | WP_099559178.1 | TRAP transporter small permease | - |
| HDIA_RS24730 () | 50018..51274 | + | 1257 | WP_099559179.1 | TRAP transporter large permease | - |
| HDIA_RS24735 () | 51306..53324 | + | 2019 | WP_099559180.1 | transketolase | - |
| HDIA_RS24740 () | 53411..54225 | + | 815 | Protein_50 | IS3 family transposase ISRosp5 | Transposase |
| HDIA_RS24745 () | 54480..55451 | - | 972 | Protein_51 | IS110 family transposase ISRel25 | Transposase |
| HDIA_RS24750 () | 55516..56409 | + | 894 | WP_099559181.1 | IS481 family transposase ISRhba4 | Transposase |
| HDIA_RS24755 () | 56639..57892 | + | 1254 | WP_099559182.1 | sugar ABC transporter substrate-binding protein | - |
| HDIA_RS24765 () | 58361..59233 | + | 873 | WP_099559184.1 | sugar ABC transporter permease | - |
| HDIA_RS24770 () | 59246..60076 | + | 831 | WP_099558295.1 | carbohydrate ABC transporter permease | - |
| HDIA_RS24775 () | 60090..61091 | + | 1002 | WP_099559185.1 | Maltose/maltodextrin import ATP-binding protein MalK | VF |
| HDIA_RS24780 () | 61261..62172 | + | 912 | WP_099559186.1 | AraC family transcriptional regulator | - |
| HDIA_RS24785 () | 62174..63217 | + | 1044 | WP_162292711.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| HDIA_RS24790 () | 64043..64230 | + | 188 | Protein_59 | IS21 family transposase ISMex13 | Transposase |
| HDIA_RS24795 () | 64378..64779 | + | 402 | Protein_60 | IS630 family transposase ISMex41 | Transposase |
| HDIA_RS24800 () | 65145..66827 | + | 1683 | WP_099559187.1 | MCP four helix bundle domain-containing protein | - |
| HDIA_RS24805 () | 67030..68241 | - | 1212 | WP_099559188.1 | MFS transporter | - |
| HDIA_RS24810 () | 68812..69705 | + | 894 | WP_099559189.1 | HTH-type transcriptional regulator PgrR | VF |
| HDIA_RS24815 () | 69751..70494 | + | 744 | WP_099559190.1 | dihydrofolate reductase family protein | - |
| HDIA_RS24820 () | 70506..70835 | + | 330 | WP_099559191.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| HDIA_RS24825 () | 70986..71459 | + | 474 | WP_099559192.1 | hypothetical protein | - |
| HDIA_RS24830 () | 71483..72226 | + | 744 | WP_099559193.1 | putative oxidoreductase | VF |
| HDIA_RS24835 () | 72873..73334 | + | 462 | WP_099559194.1 | (2Fe-2S)-binding protein | - |
| HDIA_RS24840 () | 73331..75595 | + | 2265 | WP_099559195.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
| HDIA_RS24845 () | 75716..77056 | + | 1341 | WP_099559196.1 | cytochrome c | - |
| HDIA_RS24850 () | 77600..78949 | + | 1350 | WP_099559197.1 | adenylate/guanylate cyclase domain-containing protein | - |
| HDIA_RS24855 () | 79042..79188 | - | 147 | Protein_72 | IS3 family transposase | - |
| HDIA_RS24860 () | 79187..79771 | - | 585 | Protein_73 | MFS transporter | - |
| HDIA_RS24870 () | 80629..81945 | - | 1317 | WP_099559198.1 | IncP-type conjugal transfer protein TrbI | - |
| HDIA_RS24875 () | 81942..82409 | - | 468 | WP_099559199.1 | conjugal transfer protein TrbH | - |
| HDIA_RS24880 () | 82413..83237 | - | 825 | WP_099559200.1 | P-type conjugative transfer protein TrbG | - |
| HDIA_RS24885 () | 83258..83920 | - | 663 | WP_099559201.1 | conjugal transfer protein TrbF | - |
| HDIA_RS24890 () | 83929..85092 | - | 1164 | WP_099559202.1 | P-type conjugative transfer protein TrbL | - |
| HDIA_RS24895 () | 85076..85285 | - | 210 | WP_099559203.1 | entry exclusion protein TrbK | - |
| HDIA_RS24900 () | 85282..86082 | - | 801 | WP_099559204.1 | P-type conjugative transfer protein TrbJ | - |
| HDIA_RS24905 () | 86054..88498 | - | 2445 | WP_099559205.1 | conjugal transfer protein TrbE | - |
| HDIA_RS24910 () | 88505..88804 | - | 300 | WP_099559206.1 | conjugal transfer protein TrbD | - |
| HDIA_RS24915 () | 88797..89171 | - | 375 | WP_099559207.1 | TrbC/VirB2 family protein | - |
| HDIA_RS24920 () | 89161..90132 | - | 972 | WP_099559208.1 | Type IV secretion system protein VirB11 | VF |
| HDIA_RS24925 () | 90510..91724 | + | 1215 | WP_099559243.1 | hypothetical protein | VF |
| HDIA_RS24930 () | 91721..92722 | + | 1002 | WP_157775828.1 | plasmid partitioning protein RepB | - |
| HDIA_RS24935 () | 92950..94236 | + | 1287 | WP_099559210.1 | replication initiation protein RepC | - |
| HDIA_RS24940 () | 94655..95344 | + | 690 | WP_099559211.1 | GntR family transcriptional regulator | - |
| HDIA_RS24945 () | 95592..96620 | + | 1029 | WP_099559212.1 | TRAP transporter substrate-binding protein | - |
| HDIA_RS24950 () | 96879..97388 | + | 510 | WP_099559213.1 | TRAP transporter small permease | - |
| HDIA_RS24955 () | 97397..98704 | + | 1308 | WP_099559214.1 | TRAP transporter large permease subunit | - |
| HDIA_RS24960 () | 98724..99923 | + | 1200 | WP_099559215.1 | mandelate racemase/muconate lactonizing enzyme family protein | - |
| HDIA_RS24965 () | 100006..100767 | + | 762 | WP_099559216.1 | Gluconate 5-dehydrogenase | VF |
| HDIA_RS24970 () | 100904..101941 | + | 1038 | WP_099559244.1 | L-idonate 5-dehydrogenase | - |
| HDIA_RS24975 () | 102025..102999 | + | 975 | WP_099559245.1 | NAD(P)-binding domain-containing protein | - |
| HDIA_RS25550 () | 103204..103347 | - | 144 | WP_162292712.1 | hypothetical protein | - |
| HDIA_RS24980 () | 103543..103866 | - | 324 | WP_099559217.1 | hypothetical protein | - |
| HDIA_RS24990 () | 104879..105127 | + | 249 | WP_099559218.1 | plasmid stabilization protein | - |
| HDIA_RS24995 () | 105124..105537 | + | 414 | WP_099559219.1 | type II toxin-antitoxin system VapC family toxin | - |
| HDIA_RS25000 () | 105562..106611 | - | 1050 | WP_099559220.1 | site-specific integrase | - |
| HDIA_RS25005 () | 106608..106997 | - | 390 | WP_099559221.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HDIA_RS25010 () | 106997..107251 | - | 255 | WP_099559222.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| HDIA_RS25015 () | 107534..108373 | + | 840 | WP_099559223.1 | DUF1403 family protein | - |
| HDIA_RS25020 () | 108407..111382 | - | 2976 | WP_099559224.1 | Tn3 family transposase TnpA_ISAzs17 | Transposase |
| HDIA_RS25025 () | 111536..112120 | + | 585 | WP_099559225.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HDIA_RS25030 () | 112392..112859 | + | 468 | WP_099559246.1 | Rrf2 family transcriptional regulator | - |
| HDIA_RS25035 () | 113050..114219 | + | 1170 | WP_099559226.1 | sulfate ABC transporter substrate-binding protein | - |
| HDIA_RS25040 () | 114223..115062 | + | 840 | WP_099559227.1 | sulfate ABC transporter permease subunit CysT | - |
| HDIA_RS25045 () | 115055..115933 | + | 879 | WP_099559228.1 | sulfate ABC transporter permease subunit CysW | - |
| HDIA_RS25050 () | 115945..116664 | + | 720 | WP_099559229.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| HDIA_RS25055 () | 117049..117528 | + | 480 | WP_099559230.1 | Lrp/AsnC family transcriptional regulator | - |
| HDIA_RS25060 () | 117570..118226 | + | 657 | WP_099559231.1 | peroxiredoxin | - |
| HDIA_RS25065 () | 118373..118969 | + | 597 | WP_099559232.1 | alpha/beta hydrolase | - |
| HDIA_RS25555 () | 119064..119276 | + | 213 | WP_157775829.1 | hypothetical protein | - |
| HDIA_RS25070 () | 119273..120637 | + | 1365 | WP_099559233.1 | FAD/NAD(P)-binding protein | - |
| HDIA_RS25075 () | 120777..121346 | + | 570 | WP_099559234.1 | FMN reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|