MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 132899 bp
Accession: NZ_LT905060 Location: 4126658..4259556 Organism: Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 Replicon: chromosome
Accession: NZ_LT905060 Location: 4126658..4259556 Organism: Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJZ88_RS20305 | 4122457..4123758 | + | 1302 | WP_275548882.1 | anaerobic C4-dicarboxylate transporter | - |
| CJZ88_RS20310 | 4123879..4124226 | + | 348 | WP_000887832.1 | divalent cation tolerance protein CutA | - |
| CJZ88_RS20315 | 4124202..4125905 | + | 1704 | WP_000068881.1 | protein-disulfide reductase DsbD | - |
| CJZ88_RS20320 | 4125942..4126517 | + | 576 | WP_001188506.1 | transcriptional regulator | - |
| CJZ88_RS20330 | 4126868..4128127 | + | 1260 | WP_000954536.1 | hypothetical protein ; Integrase | Integrase |
| CJZ88_RS20335 | 4128438..4129721 | + | 1284 | WP_000975154.1 | SH3 domain-containing protein | - |
| CJZ88_RS20340 | 4129806..4130075 | + | 270 | Protein_3985 | integrase | - |
| CJZ88_RS20345 | 4130702..4131484 | - | 783 | WP_000511749.1 | hypothetical protein ; Integrase | Integrase |
| CJZ88_RS20350 | 4131754..4131948 | + | 195 | WP_162009227.1 | hypothetical protein | - |
| CJZ88_RS20355 | 4132341..4132561 | - | 221 | Protein_3988 | helix-turn-helix transcriptional regulator | - |
| CJZ88_RS20360 | 4132558..4133019 | - | 462 | WP_000246267.1 | hypothetical protein | - |
| CJZ88_RS20365 | 4133566..4135239 | + | 1674 | WP_010989301.1 | hypothetical protein | - |
| CJZ88_RS20370 | 4135320..4137605 | + | 2286 | WP_010989300.1 | hypothetical protein | - |
| CJZ88_RS20375 | 4137909..4138160 | + | 252 | WP_024131240.1 | hypothetical protein | - |
| CJZ88_RS20380 | 4138242..4138694 | + | 453 | WP_000434168.1 | hypothetical protein | - |
| CJZ88_RS20385 | 4138874..4139362 | - | 489 | WP_000622308.1 | GNAT family N-acetyltransferase | Toxin Detail |
| CJZ88_RS20390 | 4139359..4139652 | - | 294 | WP_001143724.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| CJZ88_RS20395 | 4140079..4141092 | - | 1014 | WP_000449622.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CJZ88_RS20400 | 4141256..4142845 | - | 1590 | WP_000488995.1 | TraI domain-containing protein | - |
| CJZ88_RS20405 | 4142829..4144340 | - | 1512 | WP_001120833.1 | UvrD-helicase domain-containing protein | - |
| CJZ88_RS20410 | 4145194..4145733 | + | 540 | WP_001210944.1 | Vi polysaccharide biosynthesis regulator TviA | - |
| CJZ88_RS20415 | 4145978..4147255 | + | 1278 | WP_000466893.1 | UDP-N-acetyl-D-mannosamine dehydrogenase | VF |
| CJZ88_RS20420 | 4147258..4148304 | + | 1047 | WP_000127915.1 | GDP-L-fucose synthase | VF |
| CJZ88_RS20425 | 4148328..4150823 | + | 2496 | WP_010989299.1 | hypothetical protein | VF |
| CJZ88_RS20430 | 4150823..4152559 | + | 1737 | WP_000632616.1 | Glycosyltransferase Gtf1 | VF |
| CJZ88_RS20435 | 4152604..4153671 | + | 1068 | WP_000720235.1 | hypothetical protein | VF |
| CJZ88_RS20440 | 4153681..4154475 | + | 795 | WP_001023498.1 | hypothetical protein | VF |
| CJZ88_RS20445 | 4154501..4155196 | + | 696 | WP_000467404.1 | hypothetical protein | VF |
| CJZ88_RS20450 | 4155219..4156523 | + | 1305 | WP_000431675.1 | hypothetical protein | VF |
| CJZ88_RS20455 | 4156543..4158513 | + | 1971 | WP_000052242.1 | Beta-barrel assembly-enhancing protease | VF |
| CJZ88_RS20460 | 4158815..4159561 | - | 747 | WP_000354257.1 | class I SAM-dependent methyltransferase | - |
| CJZ88_RS20465 | 4159561..4160451 | - | 891 | WP_001681808.1 | class I SAM-dependent methyltransferase | - |
| CJZ88_RS20470 | 4160462..4160719 | - | 258 | WP_001681810.1 | YjhX family toxin | - |
| CJZ88_RS20475 | 4161021..4161131 | - | 111 | Protein_4012 | autoinducer 2 ABC transporter substrate-binding protein | - |
| CJZ88_RS20480 | 4161366..4161710 | + | 345 | Protein_4013 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CJZ88_RS20485 | 4161826..4162851 | - | 1026 | WP_000027757.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| CJZ88_RS20490 | 4162855..4163487 | - | 633 | WP_000052560.1 | helix-turn-helix domain-containing protein | - |
| CJZ88_RS20495 | 4163604..4163846 | + | 243 | WP_000102106.1 | Rha family transcriptional regulator | - |
| CJZ88_RS20500 | 4163879..4164388 | + | 510 | WP_000460852.1 | phage regulatory CII family protein | - |
| CJZ88_RS20505 | 4164396..4164596 | + | 201 | WP_000956167.1 | DUF2724 domain-containing protein | - |
| CJZ88_RS20510 | 4164560..4164901 | + | 342 | WP_000963479.1 | DUF5347 family protein | - |
| CJZ88_RS20515 | 4164969..4165202 | + | 234 | WP_001244240.1 | DUF2732 family protein | - |
| CJZ88_RS20520 | 4165202..4165429 | + | 228 | WP_000785510.1 | TraR/DksA family transcriptional regulator | - |
| CJZ88_RS20525 | 4165426..4166010 | + | 585 | WP_001090717.1 | exonuclease domain-containing protein | - |
| CJZ88_RS20530 | 4166007..4166867 | + | 861 | WP_000104130.1 | DNA adenine methylase | - |
| CJZ88_RS20535 | 4166858..4169253 | + | 2396 | Protein_4024 | replication endonuclease | - |
| CJZ88_RS20540 | 4169421..4169609 | + | 189 | WP_001154438.1 | hypothetical protein | - |
| CJZ88_RS20545 | 4169621..4169854 | + | 234 | WP_001217561.1 | DinI family protein | - |
| CJZ88_RS20550 | 4169950..4170168 | + | 219 | WP_000835188.1 | hypothetical protein | - |
| CJZ88_RS20555 | 4170178..4171242 | + | 1065 | WP_000829584.1 | hypothetical protein | - |
| CJZ88_RS20560 | 4171239..4172303 | + | 1065 | WP_000789323.1 | hypothetical protein | - |
| CJZ88_RS20565 | 4172323..4173018 | + | 696 | WP_000080839.1 | hypothetical protein | - |
| CJZ88_RS20570 | 4173067..4174110 | - | 1044 | WP_001681813.1 | phage portal protein | - |
| CJZ88_RS20575 | 4174110..4175876 | - | 1767 | WP_001098453.1 | terminase ATPase subunit family protein | - |
| CJZ88_RS20580 | 4176019..4176852 | + | 834 | WP_000216272.1 | GPO family capsid scaffolding protein | - |
| CJZ88_RS20585 | 4176869..4177933 | + | 1065 | WP_000730751.1 | phage major capsid protein, P2 family | - |
| CJZ88_RS20590 | 4177937..4178587 | + | 651 | WP_000059175.1 | terminase endonuclease subunit | - |
| CJZ88_RS20595 | 4178681..4179145 | + | 465 | WP_000673540.1 | head completion/stabilization protein | - |
| CJZ88_RS20600 | 4179145..4179348 | + | 204 | WP_000868184.1 | tail protein X | - |
| CJZ88_RS20605 | 4179352..4179567 | + | 216 | WP_000171566.1 | HP1 family phage holin | - |
| CJZ88_RS20610 | 4179548..4180057 | + | 510 | WP_001097942.1 | lysozyme | - |
| CJZ88_RS20615 | 4180062..4180439 | + | 378 | WP_000731034.1 | DNZ54_00345 family protein | - |
| CJZ88_RS20620 | 4180436..4180864 | + | 429 | WP_024131238.1 | Rz-like lysis system protein LysB | - |
| CJZ88_RS20625 | 4180749..4180997 | + | 249 | WP_223229656.1 | Rz1-like lysis system protein LysC | - |
| CJZ88_RS20630 | 4180960..4181391 | + | 432 | WP_001039966.1 | phage tail protein | - |
| CJZ88_RS20635 | 4181384..4181830 | + | 447 | WP_000343944.1 | phage virion morphogenesis protein | - |
| CJZ88_RS20640 | 4181899..4182477 | + | 579 | WP_000993749.1 | phage baseplate assembly protein V | - |
| CJZ88_RS20645 | 4182474..4182833 | + | 360 | WP_000177408.1 | GPW/gp25 family protein | - |
| CJZ88_RS20650 | 4182820..4183728 | + | 909 | WP_000268327.1 | baseplate assembly protein | - |
| CJZ88_RS20655 | 4183721..4184326 | + | 606 | WP_001086816.1 | phage tail protein I | - |
| CJZ88_RS20660 | 4184323..4185942 | + | 1620 | WP_000104806.1 | phage tail protein | - |
| CJZ88_RS20665 | 4185949..4186356 | + | 408 | WP_000006337.1 | tail fiber assembly protein | - |
| CJZ88_RS20670 | 4186554..4187276 | - | 723 | WP_000161708.1 | hypothetical protein | VF |
| CJZ88_RS20675 | 4187487..4187708 | + | 222 | Protein_4052 | helix-turn-helix domain-containing protein | - |
| CJZ88_RS20680 | 4187811..4188983 | + | 1173 | WP_000046101.1 | phage tail sheath protein | - |
| CJZ88_RS20685 | 4188993..4189508 | + | 516 | WP_001207653.1 | phage major tail tube protein | - |
| CJZ88_RS20690 | 4189563..4189865 | + | 303 | WP_001280965.1 | phage tail assembly protein | - |
| CJZ88_RS20695 | 4189880..4189999 | + | 120 | WP_000763315.1 | GpE family phage tail protein | - |
| CJZ88_RS20700 | 4189992..4192772 | + | 2781 | WP_001282813.1 | phage tail tape measure protein | - |
| CJZ88_RS20705 | 4192772..4193257 | + | 486 | WP_000980405.1 | phage tail protein | - |
| CJZ88_RS20710 | 4193254..4194354 | + | 1101 | WP_001011750.1 | phage late control D family protein | - |
| CJZ88_RS20715 | 4194422..4194640 | + | 219 | WP_001775272.1 | ogr/Delta-like zinc finger family protein | - |
| CJZ88_RS20720 | 4194727..4195104 | - | 378 | WP_001039750.1 | hypothetical protein | - |
| CJZ88_RS20725 | 4195238..4195324 | + | 87 | Protein_4062 | peptidase | - |
| CJZ88_RS20730 | 4195324..4196598 | + | 1275 | WP_000457555.1 | Y-family DNA polymerase | - |
| CJZ88_RS20735 | 4196730..4196999 | + | 270 | WP_001222413.1 | hypothetical protein | - |
| CJZ88_RS20740 | 4197099..4197425 | - | 327 | WP_000911568.1 | DUF3085 domain-containing protein | - |
| CJZ88_RS20745 | 4197500..4198399 | - | 900 | WP_000022216.1 | hypothetical protein | - |
| CJZ88_RS20750 | 4198473..4199381 | - | 909 | WP_000881183.1 | hypothetical protein | - |
| CJZ88_RS20755 | 4199453..4201402 | - | 1950 | WP_001097965.1 | zincin-like metallopeptidase domain-containing protein | - |
| CJZ88_RS20760 | 4201491..4201949 | - | 459 | WP_000115421.1 | hypothetical protein | - |
| CJZ88_RS20765 | 4202027..4202323 | - | 297 | WP_000968700.1 | hypothetical protein | - |
| CJZ88_RS20770 | 4202320..4202772 | - | 453 | WP_000979718.1 | hypothetical protein | - |
| CJZ88_RS20775 | 4202790..4202999 | - | 210 | WP_000018145.1 | hypothetical protein | - |
| CJZ88_RS20780 | 4203370..4203750 | - | 381 | WP_001103837.1 | hypothetical protein | - |
| CJZ88_RS20785 | 4203846..4204148 | - | 303 | WP_001020123.1 | hypothetical protein | - |
| CJZ88_RS20790 | 4204872..4205792 | - | 921 | WP_000907593.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CJZ88_RS20795 | 4207058..4207600 | + | 543 | WP_010989295.1 | DUF1062 domain-containing protein | - |
| CJZ88_RS20800 | 4207811..4208452 | - | 642 | WP_000502502.1 | ParB N-terminal domain-containing protein | - |
| CJZ88_RS20805 | 4208437..4209684 | - | 1248 | WP_001283066.1 | phosphoadenosine phosphosulfate reductase | - |
| CJZ88_RS20810 | 4209972..4210331 | + | 360 | WP_010989293.1 | hypothetical protein | - |
| CJZ88_RS20815 | 4210555..4210944 | + | 390 | WP_000993574.1 | hypothetical protein | - |
| CJZ88_RS20820 | 4210980..4212485 | - | 1506 | WP_000213770.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| CJZ88_RS20825 | 4212818..4214215 | - | 1398 | WP_014341560.1 | integrating conjugative element protein | - |
| CJZ88_RS20830 | 4214263..4215231 | - | 969 | WP_000838927.1 | TIGR03756 family integrating conjugative element protein | - |
| CJZ88_RS20835 | 4215228..4215620 | - | 393 | WP_000821941.1 | TIGR03757 family integrating conjugative element protein | - |
| CJZ88_RS20840 | 4215775..4216161 | - | 387 | WP_000054770.1 | hypothetical protein | - |
| CJZ88_RS20845 | 4216316..4219028 | - | 2713 | Protein_4086 | conjugative transfer ATPase | - |
| CJZ88_RS20850 | 4219151..4219600 | - | 450 | WP_000244536.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| CJZ88_RS20855 | 4219587..4221065 | - | 1479 | WP_001165842.1 | TIGR03752 family integrating conjugative element protein | - |
| CJZ88_RS20860 | 4221055..4221954 | - | 900 | WP_001240640.1 | TIGR03749 family integrating conjugative element protein | - |
| CJZ88_RS20865 | 4221954..4222607 | - | 654 | WP_000086082.1 | TIGR03746 family integrating conjugative element protein | - |
| CJZ88_RS20870 | 4222604..4222978 | - | 375 | WP_000848326.1 | TIGR03750 family conjugal transfer protein | - |
| CJZ88_RS20875 | 4222988..4223353 | - | 366 | WP_223228898.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| CJZ88_RS20880 | 4223380..4223613 | - | 234 | WP_015899494.1 | TIGR03758 family integrating conjugative element protein | - |
| CJZ88_RS20885 | 4223619..4223891 | - | 273 | WP_001686573.1 | RAQPRD family integrative conjugative element protein | - |
| CJZ88_RS20890 | 4224110..4224868 | - | 759 | WP_010989289.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| CJZ88_RS20895 | 4224865..4226955 | - | 2091 | WP_000071290.1 | type IV conjugative transfer system coupling protein TraD | - |
| CJZ88_RS20900 | 4226975..4227544 | - | 570 | WP_000626967.1 | restriction endonuclease | - |
| CJZ88_RS20905 | 4227554..4228054 | - | 501 | WP_000253629.1 | integrating conjugative element protein | - |
| CJZ88_RS20910 | 4228090..4228776 | - | 687 | WP_000013624.1 | hypothetical protein | VF |
| CJZ88_RS20915 | 4228755..4229495 | - | 741 | WP_001768408.1 | TIGR03759 family integrating conjugative element protein | - |
| CJZ88_RS20920 | 4229514..4230428 | - | 915 | WP_000214158.1 | hypothetical protein | - |
| CJZ88_RS20925 | 4230385..4230747 | - | 363 | WP_001149494.1 | hypothetical protein | - |
| CJZ88_RS20930 | 4230935..4231810 | - | 876 | WP_000994659.1 | hypothetical protein | - |
| CJZ88_RS20935 | 4232022..4232489 | - | 468 | WP_000455463.1 | hypothetical protein | - |
| CJZ88_RS20940 | 4232586..4233737 | - | 1152 | WP_000089603.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CJZ88_RS20945 | 4234084..4235391 | - | 1308 | WP_000744276.1 | hypothetical protein | VF |
| CJZ88_RS20950 | 4235388..4236050 | - | 663 | WP_000218700.1 | hypothetical protein | VF |
| CJZ88_RS20955 | 4236047..4236490 | - | 444 | WP_223228896.1 | hypothetical protein | VF |
| CJZ88_RS20960 | 4236533..4237129 | - | 597 | WP_024131234.1 | hypothetical protein | VF |
| CJZ88_RS20965 | 4237168..4237557 | - | 390 | WP_275548883.1 | hypothetical protein | VF |
| CJZ88_RS20970 | 4237521..4238252 | - | 732 | WP_275548884.1 | hypothetical protein | VF |
| CJZ88_RS20975 | 4238249..4239964 | - | 1716 | WP_001289222.1 | hypothetical protein | VF |
| CJZ88_RS20980 | 4239974..4240354 | - | 381 | WP_014341558.1 | hypothetical protein | VF |
| CJZ88_RS20985 | 4240542..4241828 | - | 1287 | WP_000763621.1 | hypothetical protein | VF |
| CJZ88_RS20990 | 4241830..4242168 | - | 339 | WP_048657783.1 | hypothetical protein | VF |
| CJZ88_RS20995 | 4242134..4243069 | - | 936 | WP_049783585.1 | hypothetical protein | VF |
| CJZ88_RS21000 | 4243540..4243959 | - | 420 | WP_000539682.1 | hypothetical protein | VF |
| CJZ88_RS21005 | 4243962..4245206 | - | 1245 | WP_001095932.1 | hypothetical protein | VF |
| CJZ88_RS21010 | 4245371..4246321 | - | 951 | Protein_4119 | hypothetical protein | VF |
| CJZ88_RS21015 | 4246387..4246923 | - | 537 | WP_000157067.1 | single-stranded DNA-binding protein | - |
| CJZ88_RS21020 | 4246936..4247154 | - | 219 | WP_000958171.1 | hypothetical protein | - |
| CJZ88_RS21025 | 4247235..4247684 | - | 450 | WP_000032521.1 | STY4534 family ICE replication protein | - |
| CJZ88_RS21030 | 4248352..4250346 | - | 1995 | WP_001241572.1 | DNA topoisomerase III | - |
| CJZ88_RS21035 | 4250457..4251233 | - | 777 | WP_001290445.1 | TIGR03761 family integrating conjugative element protein | - |
| CJZ88_RS21040 | 4251822..4253132 | - | 1311 | WP_001194350.1 | STY4528 family pathogenicity island replication protein | - |
| CJZ88_RS21045 | 4253162..4253410 | - | 249 | WP_000377625.1 | hypothetical protein | - |
| CJZ88_RS21050 | 4253410..4253967 | - | 558 | WP_000144322.1 | DUF2857 domain-containing protein | - |
| CJZ88_RS21055 | 4254052..4254774 | - | 723 | WP_001275616.1 | DUF2786 domain-containing protein | - |
| CJZ88_RS21060 | 4254761..4255021 | - | 261 | WP_000838568.1 | hypothetical protein | - |
| CJZ88_RS21065 | 4255235..4257034 | - | 1800 | WP_001029724.1 | ParB family protein | - |
| CJZ88_RS21070 | 4257027..4258390 | - | 1364 | Protein_4131 | SPI-7-type island replicative DNA helicase | - |
| CJZ88_RS21075 | 4258387..4259421 | - | 1035 | WP_001195363.1 | hypothetical protein | VF |
| CJZ88_RS21080 | 4259635..4259709 | - | 75 | Protein_4133 | helix-turn-helix domain-containing protein | - |
| CJZ88_RS21085 | 4260089..4260166 | + | 78 | Protein_4134 | porin family protein | - |
| CJZ88_RS21090 | 4260266..4261018 | + | 753 | WP_001785756.1 | non-specific acid phosphatase | - |
| CJZ88_RS21095 | 4261259..4261750 | - | 492 | WP_000626103.1 | GNAT family N-acetyltransferase | - |
| CJZ88_RS21100 | 4261747..4262040 | - | 294 | WP_001110456.1 | DUF1778 domain-containing protein | - |
| CJZ88_RS21105 | 4262357..4262579 | + | 223 | Protein_4138 | hypothetical protein | - |
| CJZ88_RS21110 | 4262845..4263720 | + | 876 | WP_000921674.1 | AraC family transcriptional regulator | - |
| CJZ88_RS21115 | 4263717..4264004 | + | 288 | WP_001269916.1 | transcriptional regulator RtsB | - |
| CJZ88_RS21120 | 4264027..4264243 | + | 217 | Protein_4141 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|