MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 60076 bp
Accession: NZ_LT853885 Location: 4145492..4205567 Organism: Xanthomonas fragariae strain PD5205 Replicon: chromosome
Accession: NZ_LT853885 Location: 4145492..4205567 Organism: Xanthomonas fragariae strain PD5205 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PD5205_RS19305 () | 4141401..4141638 | + | 238 | Protein_3710 | transposase | - |
| PD5205_RS21020 () | 4141838..4141945 | + | 108 | Protein_3711 | IS30 family transposase | - |
| PD5205_RS19310 () | 4141973..4144213 | - | 2241 | WP_002803755.1 | glycine--tRNA ligase subunit beta | - |
| PD5205_RS19315 () | 4144401..4145309 | - | 909 | WP_002803757.1 | glycine--tRNA ligase subunit alpha | - |
| PD5205_RS19320 () | 4145400..4147214 | + | 1815 | WP_002803759.1 | GspE/PulE family protein | - |
| PD5205_RS19325 () | 4147821..4148585 | + | 765 | WP_002803761.1 | glutamine amidotransferase | - |
| PD5205_RS19330 () | 4148631..4149530 | + | 900 | WP_002803762.1 | hypothetical protein | - |
| PD5205_RS19335 () | 4149854..4150591 | - | 738 | WP_002803765.1 | twin-arginine translocase subunit TatC | - |
| PD5205_RS19340 () | 4150588..4151199 | - | 612 | WP_002803767.1 | Sec-independent protein translocase protein TatB | - |
| PD5205_RS19345 () | 4151215..4151442 | - | 228 | WP_002803779.1 | Sec-independent protein translocase subunit TatA | - |
| PD5205_RS19350 () | 4151516..4152400 | - | 885 | WP_002803781.1 | hypothetical protein | - |
| PD5205_RS19355 () | 4152555..4153520 | + | 966 | WP_002803784.1 | ferrochelatase | - |
| PD5205_RS19360 () | 4153523..4154389 | + | 867 | WP_040762195.1 | alpha/beta hydrolase | - |
| PD5205_RS19365 () | 4154462..4155247 | - | 786 | WP_040762214.1 | M48 family metallopeptidase | - |
| PD5205_RS21520 () | 4155341..4155481 | + | 141 | WP_156775375.1 | hypothetical protein | - |
| PD5205_RS19370 () | 4155521..4156426 | - | 906 | WP_002803791.1 | recombination-associated protein RdgC | - |
| PD5205_RS19375 () | 4156490..4157401 | - | 912 | WP_002803793.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| PD5205_RS19385 () | 4157766..4158839 | - | 1074 | WP_002803797.1 | LacI family DNA-binding transcriptional regulator | - |
| PD5205_RS21025 () | 4158875..4159446 | + | 572 | Protein_3728 | hypothetical protein | - |
| PD5205_RS19395 () | 4159515..4162133 | + | 2619 | Protein_3729 | glycoside hydrolase family 3 C-terminal domain-containing protein | - |
| PD5205_RS19400 () | 4162252..4162493 | + | 242 | Protein_3730 | hypothetical protein | - |
| PD5205_RS19405 () | 4162470..4163839 | - | 1370 | Protein_3731 | IS5 family transposase IS1478 | Transposase |
| PD5205_RS21030 () | 4164076..4164276 | - | 201 | Protein_3732 | IS481 family transposase ISRel12 | Transposase |
| PD5205_RS19420 () | 4165712..4166815 | + | 1104 | WP_002803827.1 | type I restriction enzyme HsdR N-terminal domain-containing protein | - |
| PD5205_RS19430 () | 4167353..4168159 | + | 807 | WP_002801519.1 | IS5 family transposase ISAzo23 | Transposase |
| PD5205_RS21035 () | 4168175..4169709 | - | 1535 | Protein_3736 | GAF domain-containing protein | - |
| PD5205_RS19445 () | 4169706..4170299 | - | 594 | WP_002803834.1 | biliverdin-producing heme oxygenase | - |
| PD5205_RS19450 () | 4170399..4171179 | - | 781 | Protein_3738 | MFS transporter | - |
| PD5205_RS19455 () | 4171306..4173471 | - | 2166 | WP_002803836.1 | lytic murein transglycosylase | - |
| PD5205_RS19460 () | 4173858..4174064 | - | 207 | WP_002803837.1 | hypothetical protein | - |
| PD5205_RS19465 () | 4174299..4174688 | - | 390 | WP_002803838.1 | YchJ family protein | - |
| PD5205_RS19470 () | 4174874..4175653 | + | 780 | WP_002803839.1 | TSUP family transporter | - |
| PD5205_RS19480 () | 4175935..4177116 | - | 1182 | WP_002803842.1 | DUF3322 and DUF2220 domain-containing protein | - |
| PD5205_RS19485 () | 4177232..4180646 | - | 3415 | Protein_3744 | ATP-binding protein | - |
| PD5205_RS19495 () | 4180947..4181648 | - | 702 | WP_002803844.1 | DUF4194 domain-containing protein | - |
| PD5205_RS19500 () | 4181632..4183104 | - | 1473 | WP_002803846.1 | DUF3375 domain-containing protein | - |
| PD5205_RS19505 () | 4183820..4183821 | - | 2 | WP_088079897.1 | IS5 family transposase | - |
| PD5205_RS19510 () | 4184243..4184872 | - | 630 | WP_052032093.1 | GTP cyclohydrolase I FolE | - |
| PD5205_RS19515 () | 4184943..4186304 | - | 1362 | WP_002803861.1 | MFS transporter | - |
| PD5205_RS19520 () | 4186435..4186857 | - | 423 | WP_002803865.1 | hypothetical protein | - |
| PD5205_RS19525 () | 4187174..4188190 | - | 1017 | WP_040762221.1 | hypothetical protein | - |
| PD5205_RS19530 () | 4189460..4189666 | + | 207 | WP_002803872.1 | hypothetical protein | - |
| PD5205_RS19535 () | 4189653..4190765 | + | 1113 | WP_002803875.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PD5205_RS19540 () | 4191123..4192120 | + | 998 | Protein_3754 | IS3 family transposase | - |
| PD5205_RS19545 () | 4192410..4193378 | - | 969 | WP_065975413.1 | IS5 family transposase IS1646 | Transposase |
| PD5205_RS19550 () | 4193623..4194636 | - | 1014 | WP_082244192.1 | hypothetical protein | - |
| PD5205_RS19555 () | 4194817..4195419 | - | 603 | WP_083215096.1 | IS5 family transposase IS1478 | Transposase |
| PD5205_RS21045 () | 4195525..4195827 | - | 303 | WP_145954077.1 | hypothetical protein | - |
| PD5205_RS19560 () | 4196029..4196361 | + | 333 | WP_002803887.1 | hypothetical protein | - |
| PD5205_RS19570 () | 4196905..4197195 | - | 291 | WP_002803896.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| PD5205_RS19575 () | 4197214..4197495 | - | 282 | WP_002803897.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PD5205_RS19580 () | 4197959..4200034 | - | 2076 | WP_065975458.1 | exodeoxyribonuclease V subunit alpha | - |
| PD5205_RS19585 () | 4200031..4203900 | - | 3870 | WP_002803902.1 | exodeoxyribonuclease V subunit beta | - |
| PD5205_RS19590 () | 4203897..4207301 | - | 3405 | WP_002803905.1 | exodeoxyribonuclease V subunit gamma | - |
| PD5205_RS19595 () | 4207704..4208498 | + | 795 | WP_002803908.1 | ATP-binding cassette domain-containing protein | - |
| PD5205_RS19600 () | 4208498..4209247 | + | 750 | WP_002803911.1 | MlaE family lipid ABC transporter permease subunit | - |
| PD5205_RS19605 () | 4209259..4209792 | + | 534 | WP_002803915.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| PD5205_RS19610 () | 4209789..4210451 | + | 663 | WP_002803917.1 | ABC transporter substrate-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|