MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 17637 bp
Accession: NZ_LT853885 Location: 1989322..2006958 Organism: Xanthomonas fragariae strain PD5205 Replicon: chromosome
Accession: NZ_LT853885 Location: 1989322..2006958 Organism: Xanthomonas fragariae strain PD5205 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PD5205_RS09330 () | 1985526..1986419 | + | 894 | WP_002805770.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| PD5205_RS09335 () | 1986573..1986860 | + | 288 | WP_108772763.1 | cation:proton antiporter | - |
| PD5205_RS09340 () | 1986966..1987612 | + | 647 | Protein_1814 | transposase | - |
| PD5205_RS09345 () | 1987639..1988563 | - | 925 | Protein_1815 | IS3 family transposase | - |
| PD5205_RS09350 () | 1988627..1989721 | + | 1095 | Protein_1816 | IS5 family transposase | - |
| PD5205_RS09355 () | 1989865..1991234 | + | 1370 | Protein_1817 | IS5 family transposase IS1478 | Transposase |
| PD5205_RS09360 () | 1991594..1991914 | - | 321 | WP_002805766.1 | DUF1244 domain-containing protein | - |
| PD5205_RS09365 () | 1991964..1992848 | + | 885 | WP_002805762.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| PD5205_RS09370 () | 1992952..1994409 | + | 1458 | WP_002805758.1 | IMP dehydrogenase | - |
| PD5205_RS09375 () | 1994535..1996100 | + | 1566 | WP_002805756.1 | glutamine-hydrolyzing GMP synthase | - |
| PD5205_RS09380 () | 1996408..1997619 | + | 1212 | WP_002805754.1 | hypothetical protein ; Integrase | Integrase |
| PD5205_RS09385 () | 1997703..1997960 | - | 258 | WP_002805752.1 | AlpA family phage regulatory protein | - |
| PD5205_RS09390 () | 1998152..1999519 | + | 1368 | WP_065975473.1 | IS5 family transposase IS1478 | Transposase |
| PD5205_RS09395 () | 1999593..2000597 | - | 1005 | WP_002805744.1 | hypothetical protein | - |
| PD5205_RS09400 () | 2000679..2000912 | + | 234 | WP_002805742.1 | hypothetical protein | - |
| PD5205_RS09405 () | 2000916..2001794 | + | 879 | WP_002805739.1 | helicase RepA family protein | - |
| PD5205_RS09410 () | 2001766..2002653 | + | 888 | WP_172404498.1 | replication protein C | - |
| PD5205_RS09415 () | 2003315..2003596 | + | 282 | WP_002805735.1 | TraK family protein | - |
| PD5205_RS09420 () | 2004008..2004262 | + | 255 | WP_002805732.1 | Arc family DNA-binding protein | Antitoxin Detail |
| PD5205_RS09425 () | 2004259..2004678 | + | 420 | WP_002805728.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PD5205_RS09430 () | 2004835..2005449 | + | 615 | WP_040762517.1 | P-type conjugative transfer protein TrbJ | - |
| PD5205_RS09435 () | 2005535..2005777 | + | 243 | Protein_1833 | IS3 family transposase ISXac3 | Transposase |
| PD5205_RS09440 () | 2005895..2007262 | + | 1368 | WP_065975195.1 | IS5 family transposase | - |
| PD5205_RS09445 () | 2007285..2008190 | + | 906 | Protein_1835 | IS3 family transposase | - |
| PD5205_RS09450 () | 2008435..2009810 | - | 1376 | Protein_1836 | IS5 family transposase | - |
| PD5205_RS20565 () | 2010215..2011063 | - | 849 | WP_145954058.1 | hypothetical protein | - |
| PD5205_RS09460 () | 2011932..2011933 | - | 2 | WP_088056830.1 | IS5 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|