MGE detailed information
MGE type: IScluster/Tn MGE length: 5294 bp
Accession: NZ_LT853884 Location: 20134..25427 Organism: Xanthomonas fragariae strain PD885 Replicon: plasmid pPD885-27
Accession: NZ_LT853884 Location: 20134..25427 Organism: Xanthomonas fragariae strain PD885 Replicon: plasmid pPD885-27
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PD885_RS21655 () | 15944..16513 | - | 570 | WP_172404532.1 | hypothetical protein | - |
| PD885_RS20145 () | 16628..16936 | - | 309 | WP_002804321.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PD885_RS20150 () | 16957..17421 | - | 465 | WP_002804324.1 | hypothetical protein | - |
| PD885_RS20155 () | 17587..17838 | + | 252 | WP_002804328.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| PD885_RS20160 () | 17835..18230 | + | 396 | WP_002804329.1 | type II toxin-antitoxin system VapC family toxin | - |
| PD885_RS21660 () | 18236..18651 | + | 416 | Protein_27 | hypothetical protein | - |
| PD885_RS20170 () | 18918..19319 | - | 402 | WP_002804331.1 | hypothetical protein | - |
| PD885_RS21220 () | 19371..19814 | + | 444 | WP_145954081.1 | hypothetical protein | - |
| PD885_RS21665 () | 19821..19985 | + | 165 | WP_156775378.1 | hypothetical protein | - |
| PD885_RS20175 () | 20173..20748 | + | 576 | WP_040762337.1 | Tn3 family transposase ISPsy42 | Transposase |
| PD885_RS20180 () | 20759..21025 | + | 267 | WP_002804333.1 | hypothetical protein | - |
| PD885_RS20185 () | 21160..22875 | + | 1716 | WP_083215115.1 | AAA family ATPase | - |
| PD885_RS20190 () | 22944..23126 | + | 183 | WP_134656646.1 | hypothetical protein | - |
| PD885_RS20195 () | 23312..23596 | - | 285 | WP_002804295.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PD885_RS20200 () | 23584..23862 | - | 279 | WP_002804296.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| PD885_RS20210 () | 24409..24834 | + | 426 | WP_172404533.1 | antitoxin VbhA family protein | - |
| PD885_RS20215 () | 24876..25427 | + | 552 | WP_088057164.1 | Tn3 family transposase TnpR_ISAzs17 | Transposase |
| PD885_RS20220 () | 25530..26162 | + | 633 | WP_088057159.1 | ParA family protein | - |
| PD885_RS20225 () | 26155..26517 | + | 363 | WP_088057160.1 | hypothetical protein | - |
| PD885_RS20230 () | 26600..26923 | + | 324 | WP_088057161.1 | partition protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|