MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 29233 bp
Accession: NZ_LT853883 Location: 1..29233 Organism: Xanthomonas fragariae strain PD885 Replicon: plasmid pPD885-29
Accession: NZ_LT853883 Location: 1..29233 Organism: Xanthomonas fragariae strain PD885 Replicon: plasmid pPD885-29
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PD885_RS19840 () | 1..876 | + | 876 | WP_002805689.1 | putative trfa-related protein | - |
| PD885_RS19845 () | 1535..1849 | + | 315 | WP_065975497.1 | transcriptional regulator KorA | - |
| PD885_RS19850 () | 1860..2660 | + | 801 | WP_065975496.1 | ParA family protein | - |
| PD885_RS19855 () | 2653..3705 | + | 1053 | WP_065975495.1 | ParB/RepB/Spo0J family partition protein | - |
| PD885_RS19860 () | 3692..3961 | + | 270 | WP_145954078.1 | hypothetical protein | - |
| PD885_RS19865 () | 4170..4463 | + | 294 | WP_002805642.1 | hypothetical protein | - |
| PD885_RS19870 () | 4438..4971 | + | 534 | WP_145954079.1 | hypothetical protein | - |
| PD885_RS19875 () | 5235..5786 | + | 552 | WP_065975505.1 | hypothetical protein | Relaxase |
| PD885_RS19880 () | 5773..6792 | + | 1020 | WP_052032118.1 | hypothetical protein | Relaxase |
| PD885_RS19890 () | 7450..8049 | + | 600 | WP_065975504.1 | hypothetical protein | - |
| PD885_RS19900 () | 8553..9305 | - | 753 | WP_065975503.1 | hypothetical protein | - |
| PD885_RS19905 () | 9526..9750 | + | 225 | WP_002805375.1 | hypothetical protein | - |
| PD885_RS21650 () | 9747..9923 | - | 177 | WP_156775376.1 | hypothetical protein | - |
| PD885_RS19910 () | 10001..10294 | - | 294 | WP_002805372.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PD885_RS19915 () | 10281..10580 | - | 300 | WP_002805369.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| PD885_RS19925 () | 11059..11484 | + | 426 | WP_167699513.1 | antitoxin VbhA family protein | - |
| PD885_RS19930 () | 11526..12101 | + | 576 | WP_065975506.1 | Tn3 family transposase TnpR_ISAzs17 | Transposase |
| PD885_RS19935 () | 12262..12486 | - | 225 | WP_002805360.1 | DUF3717 domain-containing protein | - |
| PD885_RS19940 () | 12528..13151 | - | 624 | WP_002805358.1 | transglycosylase SLT domain-containing protein | - |
| PD885_RS19945 () | 13148..14992 | - | 1845 | WP_065975501.1 | hypothetical protein | - |
| PD885_RS19950 () | 15005..16810 | - | 1806 | WP_159091469.1 | hypothetical protein | VF |
| PD885_RS19955 () | 16938..17999 | - | 1062 | WP_002805320.1 | Type IV secretion system protein VirB11 | VF |
| PD885_RS19960 () | 17999..19213 | - | 1215 | WP_002805319.1 | hypothetical protein | VF |
| PD885_RS19965 () | 19210..20019 | - | 810 | WP_082244228.1 | Type IV secretion system protein virB9 | VF |
| PD885_RS19970 () | 20016..20894 | - | 879 | WP_002805316.1 | Type IV secretion system protein virB8 | VF |
| PD885_RS19975 () | 21193..22143 | - | 951 | WP_002805314.1 | hypothetical protein | VF |
| PD885_RS19980 () | 22155..22448 | - | 294 | WP_002805313.1 | EexN family lipoprotein | - |
| PD885_RS19985 () | 22463..23173 | - | 711 | WP_002805311.1 | type IV secretion system protein | - |
| PD885_RS19990 () | 23170..24612 | - | 1443 | WP_172404531.1 | Type IV secretion system protein virB4 | VF |
| PD885_RS19995 () | 24620..25558 | - | 939 | WP_145954119.1 | Type IV secretion system protein virB4 | VF |
| PD885_RS20000 () | 25611..25973 | - | 363 | WP_002805102.1 | hypothetical protein | VF |
| PD885_RS20005 () | 25987..26256 | - | 270 | WP_040762489.1 | TrbC/VirB2 family protein | - |
| PD885_RS20010 () | 26307..26567 | - | 261 | WP_145954080.1 | hypothetical protein | - |
| PD885_RS20015 () | 26734..27195 | - | 462 | WP_002805097.1 | hypothetical protein | - |
| PD885_RS20020 () | 27236..28144 | - | 909 | WP_002805094.1 | DUF3991 and TOPRIM domain-containing protein | - |
| PD885_RS20025 () | 28379..28985 | + | 607 | Protein_35 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|