MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 105696 bp
Accession: NZ_LT601384 Location: 3423380..3529075 Organism: Escherichia coli isolate NCTC86EC Replicon: chromosome
Accession: NZ_LT601384 Location: 3423380..3529075 Organism: Escherichia coli isolate NCTC86EC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NCTC86EC_RS16820 () | 3419779..3420576 | - | 798 | WP_001522323.1 | Dr fimbrial biogenesis chaperone DraB | - |
| NCTC86EC_RS16825 () | 3420830..3421135 | - | 306 | WP_001522322.1 | AFA-III adhesin operon transcriptional regulator AfaA | - |
| NCTC86EC_RS16830 () | 3421936..3422193 | + | 258 | WP_068879479.1 | Dr hemagglutinin AFA-III operon transcriptional regulator AfaF | - |
| NCTC86EC_RS16840 () | 3422632..3422874 | - | 243 | WP_001522318.1 | hypothetical protein | - |
| NCTC86EC_RS16850 () | 3422948..3424161 | + | 1214 | WP_171844376.1 | IS3 family transposase | - |
| NCTC86EC_RS16860 () | 3424602..3424991 | - | 390 | WP_001522311.1 | hypothetical protein | - |
| NCTC86EC_RS16865 () | 3426178..3426671 | + | 494 | Protein_3219 | hypothetical protein | VF |
| NCTC86EC_RS16870 () | 3426940..3430545 | - | 3606 | WP_001522306.1 | hypothetical protein | - |
| NCTC86EC_RS26730 () | 3430952..3432180 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| NCTC86EC_RS16885 () | 3432194..3432715 | - | 522 | Protein_3222 | DNA-binding protein | - |
| NCTC86EC_RS26735 () | 3432859..3433014 | - | 156 | Protein_3223 | Rpn family recombination-promoting nuclease/putative transposase | - |
| NCTC86EC_RS28885 () | 3433119..3433442 | - | 324 | WP_157919120.1 | hypothetical protein | - |
| NCTC86EC_RS16890 () | 3433578..3434054 | + | 477 | WP_001522303.1 | ProQ/FinO family protein | - |
| NCTC86EC_RS16895 () | 3434056..3434589 | - | 534 | WP_001522302.1 | hypothetical protein | - |
| NCTC86EC_RS16900 () | 3434867..3435100 | - | 234 | WP_001522301.1 | AlpA family transcriptional regulator | - |
| NCTC86EC_RS16905 () | 3435532..3435942 | - | 411 | WP_001522299.1 | hypothetical protein | - |
| NCTC86EC_RS16910 () | 3435939..3436322 | - | 384 | WP_016234003.1 | hypothetical protein | - |
| NCTC86EC_RS29015 () | 3436490..3437055 | - | 566 | Protein_3230 | inovirus Gp2 family protein | - |
| NCTC86EC_RS16920 () | 3437251..3437445 | + | 195 | WP_000236756.1 | hypothetical protein | - |
| NCTC86EC_RS28900 () | 3437572..3437821 | - | 250 | Protein_3232 | hypothetical protein | - |
| NCTC86EC_RS28645 () | 3438791..3438997 | + | 207 | WP_001095913.1 | AlpA family transcriptional regulator | - |
| NCTC86EC_RS16930 () | 3439085..3439693 | + | 609 | WP_077634145.1 | hypothetical protein | - |
| NCTC86EC_RS16940 () | 3441680..3442835 | + | 1156 | Protein_3235 | hypothetical protein | - |
| NCTC86EC_RS16945 () | 3442919..3443791 | + | 873 | WP_068879482.1 | GTPase family protein | - |
| NCTC86EC_RS16950 () | 3444123..3446819 | + | 2697 | Protein_3237 | AIDA repeat-containing protein | - |
| NCTC86EC_RS16955 () | 3446906..3447652 | - | 747 | Protein_3238 | IS21-like element ISEc12 family helper ATPase IstB | - |
| NCTC86EC_RS16960 () | 3447667..3449208 | - | 1542 | WP_001620815.1 | IS21 family transposase ISEc12 | Transposase |
| NCTC86EC_RS16965 () | 3449403..3449831 | + | 429 | Protein_3240 | autotransporter domain-containing protein | - |
| NCTC86EC_RS16970 () | 3450148..3450966 | + | 819 | WP_001522287.1 | DUF945 domain-containing protein | - |
| NCTC86EC_RS28905 () | 3450966..3451142 | + | 177 | WP_001522285.1 | hypothetical protein | - |
| NCTC86EC_RS16975 () | 3451237..3451710 | + | 474 | WP_001522284.1 | antirestriction protein | - |
| NCTC86EC_RS16980 () | 3451725..3452201 | + | 477 | WP_001186724.1 | RadC family protein | - |
| NCTC86EC_RS16985 () | 3452382..3453881 | + | 1500 | WP_001522281.1 | IS21 family transposase ISEc10 | Transposase |
| NCTC86EC_RS16990 () | 3453878..3454633 | + | 756 | WP_001522280.1 | IS21 family transposase ISEc10 | Transposase |
| NCTC86EC_RS16995 () | 3454685..3454906 | + | 222 | WP_023909484.1 | DUF987 domain-containing protein | - |
| NCTC86EC_RS17000 () | 3454986..3455360 | + | 375 | WP_001522275.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin Detail |
| NCTC86EC_RS17005 () | 3455407..3455781 | + | 375 | WP_068879483.1 | TA system toxin CbtA family protein | Toxin Detail |
| NCTC86EC_RS17010 () | 3455778..3456269 | + | 492 | WP_001522269.1 | hypothetical protein | - |
| NCTC86EC_RS17015 () | 3456281..3456478 | + | 198 | WP_001522268.1 | DUF957 domain-containing protein | - |
| NCTC86EC_RS17020 () | 3456563..3457429 | + | 867 | WP_066009586.1 | DUF4942 domain-containing protein | - |
| NCTC86EC_RS17025 () | 3457501..3457764 | + | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| NCTC86EC_RS17030 () | 3457761..3458087 | + | 327 | WP_001522265.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NCTC86EC_RS28910 () | 3458579..3458734 | + | 156 | WP_000729639.1 | hypothetical protein | - |
| NCTC86EC_RS17040 () | 3459545..3460528 | + | 984 | WP_066008910.1 | Arabinose 5-phosphate isomerase KpsF | VF |
| NCTC86EC_RS17045 () | 3460600..3461748 | + | 1149 | WP_000905920.1 | hypothetical protein | VF |
| NCTC86EC_RS17050 () | 3461772..3463448 | + | 1677 | WP_066008909.1 | Polysialic acid transport protein KpsD | VF |
| NCTC86EC_RS17055 () | 3463458..3464198 | + | 741 | WP_001327873.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | VF |
| NCTC86EC_RS17060 () | 3464195..3466222 | + | 2028 | WP_000579529.1 | hypothetical protein | VF |
| NCTC86EC_RS17065 () | 3466257..3467495 | + | 1239 | WP_001161824.1 | hypothetical protein | VF |
| NCTC86EC_RS17070 () | 3467657..3468652 | - | 996 | WP_001208051.1 | hypothetical protein | - |
| NCTC86EC_RS17075 () | 3468658..3469686 | - | 1029 | WP_001044673.1 | hypothetical protein | VF |
| NCTC86EC_RS17080 () | 3469789..3473588 | - | 3800 | Protein_3264 | hypothetical protein | VF |
| NCTC86EC_RS17085 () | 3473642..3474877 | - | 1236 | WP_000668515.1 | hypothetical protein | - |
| NCTC86EC_RS17090 () | 3474893..3475289 | - | 397 | Protein_3266 | pantoate--beta-alanine ligase | - |
| NCTC86EC_RS17095 () | 3475301..3475972 | - | 672 | WP_000590253.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
| NCTC86EC_RS17100 () | 3475969..3476745 | - | 777 | WP_066009189.1 | Polysialic acid transport protein KpsM | VF |
| NCTC86EC_RS17105 () | 3477919..3478455 | - | 537 | WP_000942819.1 | Type II secretion system protein M | VF |
| NCTC86EC_RS17110 () | 3478457..3479634 | - | 1178 | Protein_3270 | Putative type II secretion system L-type protein YghE | VF |
| NCTC86EC_RS17115 () | 3479631..3480047 | - | 417 | Protein_3271 | hypothetical protein | VF |
| NCTC86EC_RS17125 () | 3480228..3481574 | - | 1347 | WP_071836851.1 | IS4 family transposase IS4 | Transposase |
| NCTC86EC_RS17130 () | 3481710..3483392 | - | 1683 | WP_021519491.1 | glycolate permease GlcA | - |
| NCTC86EC_RS17135 () | 3483747..3485917 | - | 2171 | Protein_3274 | malate synthase G | - |
| NCTC86EC_RS17140 () | 3485939..3486343 | - | 405 | WP_000853256.1 | protein GlcG | - |
| NCTC86EC_RS17145 () | 3486348..3487571 | - | 1224 | WP_001194816.1 | glycolate oxidase subunit GlcF | - |
| NCTC86EC_RS17150 () | 3487582..3488634 | - | 1053 | WP_000943077.1 | glycolate oxidase subunit GlcE | - |
| NCTC86EC_RS17155 () | 3488634..3490133 | - | 1500 | WP_000026117.1 | glycolate oxidase subunit GlcD | - |
| NCTC86EC_RS17160 () | 3490377..3491141 | + | 765 | WP_001297764.1 | transcriptional regulator GlcC | - |
| NCTC86EC_RS17165 () | 3491148..3492290 | - | 1143 | WP_001300526.1 | DNA-binding protein | - |
| NCTC86EC_RS17170 () | 3492667..3494388 | + | 1722 | WP_213054166.1 | 4-hydroxyphenylalkanoate adenylyltransferase | VF |
| NCTC86EC_RS17175 () | 3494385..3495299 | + | 915 | WP_001077166.1 | NAD-dependent epimerase/dehydratase family protein | - |
| NCTC86EC_RS17180 () | 3495331..3495579 | + | 249 | WP_000248097.1 | acyl carrier protein | - |
| NCTC86EC_RS17185 () | 3495579..3496751 | + | 1173 | WP_000524970.1 | 8-amino-7-oxononanoate synthase | VF |
| NCTC86EC_RS17190 () | 3496786..3497865 | - | 1080 | WP_001318997.1 | LPS export ABC transporter permease LptG | - |
| NCTC86EC_RS17195 () | 3497862..3498933 | - | 1072 | Protein_3286 | LPS export ABC transporter permease LptF | - |
| NCTC86EC_RS17200 () | 3498964..3499524 | - | 561 | WP_001298770.1 | YtfJ family protein | - |
| NCTC86EC_RS17205 () | 3499536..3500360 | - | 825 | WP_000984978.1 | hypothetical protein | - |
| NCTC86EC_RS17210 () | 3500360..3501709 | - | 1350 | WP_000896896.1 | lipopolysaccharide biosynthesis protein | - |
| NCTC86EC_RS17215 () | 3501755..3502513 | - | 759 | WP_000339531.1 | ATP-binding protein | - |
| NCTC86EC_RS17220 () | 3502545..3503258 | - | 714 | WP_001076243.1 | thymidylate kinase | - |
| NCTC86EC_RS17225 () | 3503432..3504124 | + | 693 | WP_001190781.1 | thymidylate kinase | - |
| NCTC86EC_RS17230 () | 3504173..3505672 | - | 1500 | WP_000933250.1 | inorganic phosphate transporter PitB | - |
| NCTC86EC_RS17235 () | 3505964..3507823 | - | 1860 | WP_001297309.1 | bifunctional glutathionylspermidine amidase/synthase | - |
| NCTC86EC_RS17240 () | 3508028..3508894 | + | 867 | WP_001295515.1 | glutathione-dependent disulfide-bond oxidoreductase | - |
| NCTC86EC_RS17245 () | 3509017..3509265 | - | 249 | WP_000334896.1 | hydrogenase maturation factor HybG | - |
| NCTC86EC_RS17250 () | 3509278..3509619 | - | 342 | WP_000544953.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| NCTC86EC_RS17255 () | 3509612..3510100 | - | 489 | WP_000134014.1 | hydrogenase-2 assembly chaperone | - |
| NCTC86EC_RS17260 () | 3510093..3510587 | - | 495 | WP_001221939.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| NCTC86EC_RS17265 () | 3510587..3512290 | - | 1704 | WP_000083052.1 | hydrogenase 2 large subunit | - |
| NCTC86EC_RS17270 () | 3512287..3513465 | - | 1179 | WP_000017703.1 | Ni/Fe-hydrogenase cytochrome b subunit | - |
| NCTC86EC_RS17275 () | 3513455..3514441 | - | 987 | WP_001081870.1 | hydrogenase 2 operon protein HybA | - |
| NCTC86EC_RS17280 () | 3514444..3515562 | - | 1119 | WP_066009678.1 | hydrogenase 2 small subunit | - |
| NCTC86EC_RS17290 () | 3515751..3516038 | - | 288 | WP_001059136.1 | DUF2623 domain-containing protein | - |
| NCTC86EC_RS17295 () | 3516157..3517041 | - | 885 | Protein_3305 | dienelactone hydrolase family protein | - |
| NCTC86EC_RS17300 () | 3517198..3518238 | + | 1041 | WP_000262172.1 | L-glyceraldehyde 3-phosphate reductase | - |
| NCTC86EC_RS17305 () | 3518278..3518772 | - | 495 | WP_000439331.1 | TIGR00645 family protein | - |
| NCTC86EC_RS17310 () | 3518963..3519847 | + | 885 | WP_000018760.1 | putative oxidoreductase YghA | VF |
| NCTC86EC_RS17315 () | 3520119..3520544 | - | 426 | WP_001545627.1 | TonB system transport protein ExbD | - |
| NCTC86EC_RS17320 () | 3520551..3521285 | - | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| NCTC86EC_RS17330 () | 3521537..3522724 | + | 1188 | WP_066009680.1 | cystathionine beta-lyase | - |
| NCTC86EC_RS17335 () | 3522864..3523523 | + | 660 | WP_000268419.1 | DedA family protein | - |
| NCTC86EC_RS17340 () | 3523563..3524462 | - | 900 | WP_001298382.1 | DNA-binding transcriptional regulator YqhC | - |
| NCTC86EC_RS17350 () | 3524656..3525819 | + | 1164 | WP_001058802.1 | alcohol dehydrogenase | - |
| NCTC86EC_RS17355 () | 3525924..3526751 | + | 828 | WP_066009683.1 | 2,5-didehydrogluconate reductase DkgA | - |
| NCTC86EC_RS17360 () | 3526951..3527877 | + | 927 | WP_000691619.1 | YbjP/YqhG family protein | - |
| NCTC86EC_RS17365 () | 3527928..3528185 | + | 258 | WP_000848528.1 | lipoprotein YqhH | - |
| NCTC86EC_RS17370 () | 3528228..3530446 | - | 2219 | Protein_3318 | YgiQ family radical SAM protein | - |
| NCTC86EC_RS17375 () | 3530557..3531969 | - | 1413 | WP_000059388.1 | cell division protein FtsP | - |
| NCTC86EC_RS17380 () | 3532044..3532781 | - | 738 | WP_000965722.1 | 1-acylglycerol-3-phosphate O-acyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|