MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 69815 bp
Accession: NZ_LT596222 Location: 1..69815 Organism: Yersinia pseudotuberculosis isolate NZYP4713 Replicon: plasmid 2
Accession: NZ_LT596222 Location: 1..69815 Organism: Yersinia pseudotuberculosis isolate NZYP4713 Replicon: plasmid 2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BN7064_RS21835 () | 1..867 | + | 867 | WP_002225475.1 | incFII family plasmid replication initiator RepA | - |
| BN7064_RS21850 () | 2040..2279 | + | 240 | WP_012414139.1 | hypothetical protein | - |
| BN7064_RS22490 () | 2457..2771 | + | 315 | Protein_2 | IS3 family transposase ISKpn37 | Transposase |
| BN7064_RS21870 () | 3023..3472 | + | 450 | WP_002229809.1 | hypothetical protein | VF |
| BN7064_RS21875 () | 3480..5678 | + | 2199 | WP_011191359.1 | Protein kinase YpkA | VF |
| BN7064_RS21880 () | 6074..6940 | + | 867 | WP_002225474.1 | Effector protein YopJ | VF |
| BN7064_RS21885 () | 7526..8104 | - | 579 | Protein_6 | IS3 family transposase ISYps8 | Transposase |
| BN7064_RS22870 () | 8104..8190 | + | 87 | Protein_7 | hypothetical protein | - |
| BN7064_RS21890 () | 8443..9849 | + | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| BN7064_RS21895 () | 10070..10342 | - | 273 | Protein_9 | transposase | - |
| BN7064_RS22495 () | 10361..11377 | - | 1017 | Protein_10 | IS3 family transposase | - |
| BN7064_RS21910 () | 11925..12272 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| BN7064_RS21915 () | 12497..13162 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| BN7064_RS21920 () | 13108..13737 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| BN7064_RS21925 () | 13737..14471 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| BN7064_RS21930 () | 14478..14825 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| BN7064_RS21935 () | 14826..15323 | - | 498 | WP_011191390.1 | Yop proteins translocation protein H | VF |
| BN7064_RS21940 () | 15320..15667 | - | 348 | WP_011191389.1 | Putative Yop proteins translocation protein G | VF |
| BN7064_RS21945 () | 15669..15932 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| BN7064_RS21950 () | 15933..16133 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| BN7064_RS21955 () | 16130..17389 | - | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| BN7064_RS21960 () | 17386..19209 | - | 1824 | WP_012414136.1 | Type 3 secretion system secretin | VF |
| BN7064_RS21965 () | 19215..19628 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| BN7064_RS21970 () | 19854..19952 | - | 99 | WP_011191387.1 | type III secretion system protein YscA | - |
| BN7064_RS21975 () | 20031..20846 | - | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| BN7064_RS21980 () | 20970..21365 | - | 396 | WP_002222527.1 | Type 3 secretion system pilotin | VF |
| BN7064_RS21985 () | 21941..23005 | - | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| BN7064_RS21990 () | 23005..23790 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| BN7064_RS21995 () | 23787..24053 | - | 267 | WP_002212945.1 | Surface presentation of antigens protein SpaQ | VF |
| BN7064_RS22000 () | 24055..24708 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| BN7064_RS22005 () | 24705..25628 | - | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| BN7064_RS22010 () | 25625..26992 | - | 1368 | WP_011191386.1 | hypothetical protein | VF |
| BN7064_RS22015 () | 26992..27456 | - | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| BN7064_RS22020 () | 27453..28772 | - | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| BN7064_RS22025 () | 28970..29851 | + | 882 | WP_011191384.1 | Outer membrane protein YopN | VF |
| BN7064_RS22030 () | 29832..30110 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| BN7064_RS22035 () | 30097..30468 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| BN7064_RS22040 () | 30465..30833 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| BN7064_RS22045 () | 30830..31174 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| BN7064_RS22050 () | 31161..33275 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| BN7064_RS22055 () | 33272..33712 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| BN7064_RS22060 () | 33754..34041 | + | 288 | WP_002212973.1 | hypothetical protein | VF |
| BN7064_RS22065 () | 34043..35023 | + | 981 | WP_011191383.1 | Virulence-associated V antigen | VF |
| BN7064_RS22070 () | 35036..35542 | + | 507 | WP_011117633.1 | Chaperone protein IpgC | VF |
| BN7064_RS22075 () | 35520..36725 | + | 1206 | WP_011191382.1 | Protein YopB | VF |
| BN7064_RS22080 () | 36744..37664 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| BN7064_RS22085 () | 38156..39364 | - | 1209 | WP_002209743.1 | IS256 family transposase ISEc39 | Transposase |
| BN7064_RS22090 () | 39477..40093 | - | 617 | Protein_47 | IS6 family transposase | - |
| BN7064_RS22095 () | 40114..40329 | + | 216 | WP_011191379.1 | hypothetical protein | - |
| BN7064_RS22100 () | 40717..42306 | + | 1590 | WP_012414153.1 | hypothetical protein | VF |
| BN7064_RS22105 () | 42349..42665 | - | 317 | Protein_50 | IS256 family transposase ISSod4 | Transposase |
| BN7064_RS22110 () | 42667..42792 | - | 126 | Protein_51 | transposase | - |
| BN7064_RS22115 () | 42795..43013 | + | 219 | Protein_52 | IS6 family transposase | - |
| BN7064_RS22120 () | 43542..43961 | - | 420 | WP_011191376.1 | hypothetical protein | - |
| BN7064_RS22125 () | 43979..44259 | - | 281 | Protein_54 | DDE-type integrase/transposase/recombinase | - |
| BN7064_RS22130 () | 44310..44621 | + | 312 | WP_012414151.1 | hypothetical protein | - |
| BN7064_RS22135 () | 44665..45057 | - | 393 | Protein_56 | Chaperone protein SycT | VF |
| BN7064_RS22140 () | 45057..46025 | - | 969 | WP_011191374.1 | Cysteine protease YopT | VF |
| BN7064_RS22145 () | 46525..47073 | + | 549 | WP_011191373.1 | hypothetical protein | VF |
| BN7064_RS22505 () | 47232..47525 | + | 294 | Protein_59 | IS3 family transposase | - |
| BN7064_RS22160 () | 47671..48300 | + | 630 | WP_071819182.1 | conjugal transfer protein TraT | - |
| BN7064_RS22880 () | 48407..49555 | + | 1149 | Protein_61 | IS3 family transposase | - |
| BN7064_RS22180 () | 50314..51480 | + | 1167 | WP_002220902.1 | hypothetical protein | VF |
| BN7064_RS22185 () | 51477..52442 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| BN7064_RS23170 () | 52770..53018 | + | 249 | WP_197684173.1 | hypothetical protein | - |
| BN7064_RS23065 () | 53167..53340 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| BN7064_RS22195 () | 53425..53768 | + | 344 | Protein_66 | IS6 family transposase ISEas1 | Transposase |
| BN7064_RS22200 () | 53883..54125 | + | 243 | WP_012414146.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| BN7064_RS22205 () | 54118..54417 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BN7064_RS22210 () | 54557..55216 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| BN7064_RS22215 () | 55410..55802 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| BN7064_RS22220 () | 55865..56314 | - | 450 | Protein_71 | transposase family protein | - |
| BN7064_RS22230 () | 56417..57589 | + | 1173 | WP_011191364.1 | IS21 family transposase IS21 | Transposase |
| BN7064_RS22235 () | 57589..57987 | + | 399 | Protein_73 | IS21 family transposase IS21 | Transposase |
| BN7064_RS22240 () | 58365..58790 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| BN7064_RS22260 () | 60137..60466 | - | 330 | WP_002229829.1 | hypothetical protein | - |
| BN7064_RS22265 () | 60605..61069 | - | 465 | WP_012414143.1 | hypothetical protein | - |
| BN7064_RS22270 () | 61088..61639 | - | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| BN7064_RS22275 () | 61803..64118 | + | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| BN7064_RS22280 () | 64151..64501 | - | 351 | Protein_80 | IS3 family transposase IS1351 | Transposase |
| BN7064_RS22285 () | 65104..66402 | + | 1299 | WP_011191362.1 | Adhesin YadA | VF |
| BN7064_RS22890 () | 66405..66704 | - | 300 | WP_106461760.1 | hypothetical protein | - |
| BN7064_RS22295 () | 66731..67000 | - | 270 | WP_042469136.1 | transposase | - |
| BN7064_RS22300 () | 67069..67527 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| BN7064_RS22310 () | 67699..68016 | + | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| BN7064_RS23070 () | 68043..68450 | + | 408 | WP_012414142.1 | IS3 family transposase ISKpn37 | Transposase |
| BN7064_RS22895 () | 68433..68669 | - | 237 | Protein_87 | DDE-type integrase/transposase/recombinase | - |
| BN7064_RS22325 () | 68867..69115 | + | 249 | WP_032466929.1 | phospholipase | - |
| BN7064_RS22330 () | 69253..69507 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| BN7064_RS22335 () | 69749..69815 | + | 67 | WP_075272442.1 | RepA leader peptide Tap | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|