MGE detailed information
MGE type: Genomic_island MGE length: 15184 bp
Accession: NZ_LS992185 Location: 2551953..2567136 Organism: Escherichia coli isolate Escherichia coli str. 3426 Replicon: chromosome
Accession: NZ_LS992185 Location: 2551953..2567136 Organism: Escherichia coli isolate Escherichia coli str. 3426 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC3426_RS12530 () | 2548768..2550453 | - | 1686 | WP_000628576.1 | ABC transporter ATP-binding protein/permease | - |
| EC3426_RS12535 () | 2550656..2550778 | + | 123 | WP_120795387.1 | protein YneP | - |
| EC3426_RS12540 () | 2550744..2551901 | - | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| EC3426_RS12545 () | 2551953..2553635 | - | 1683 | WP_001295684.1 | sulfatase | - |
| EC3426_RS12550 () | 2554037..2554798 | - | 762 | WP_000060492.1 | acid stress response transcriptional regulator YdeO | - |
| EC3426_RS12555 () | 2554873..2555070 | - | 198 | WP_000543384.1 | two-component system connector SafA | - |
| EC3426_RS12560 () | 2555318..2557597 | - | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| EC3426_RS12565 () | 2557931..2558845 | - | 915 | WP_000520662.1 | HTH-type transcriptional activator RhaR | VF |
| EC3426_RS12570 () | 2558904..2559407 | - | 504 | WP_000825452.1 | hypothetical protein | VF |
| EC3426_RS12575 () | 2559420..2559707 | - | 288 | Protein_2390 | hypothetical protein | VF |
| EC3426_RS12580 () | 2559749..2560222 | - | 474 | Protein_2391 | IS3 family transposase IS629 | Transposase |
| EC3426_RS12585 () | 2560312..2561820 | - | 1509 | WP_001189123.1 | group II intron reverse transcriptase/maturase | - |
| EC3426_RS12595 () | 2562493..2563232 | - | 740 | Protein_2393 | IS3 family transposase IS629 | Transposase |
| EC3426_RS12600 () | 2563288..2563533 | - | 246 | Protein_2394 | PKHD-type hydroxylase | VF |
| EC3426_RS12605 () | 2563547..2564773 | - | 1227 | Protein_2395 | hypothetical protein | VF |
| EC3426_RS12610 () | 2565028..2565236 | - | 209 | Protein_2396 | helix-turn-helix transcriptional regulator | - |
| EC3426_RS12615 () | 2565548..2566870 | - | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| EC3426_RS12620 () | 2566870..2567136 | - | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| EC3426_RS12625 () | 2567359..2568759 | - | 1401 | WP_001083595.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.008 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.008 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.01 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.01 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.008 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.008 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.008 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.008 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.008 |