MGE detailed information
MGE type: Conjugative plasmid MGE length: 159493 bp
Accession: NZ_LS992176 Location: 1..159493 Organism: Citrobacter freundii isolate Citrobacter freundii str. E2614 Replicon: plasmid 2
Accession: NZ_LS992176 Location: 1..159493 Organism: Citrobacter freundii isolate Citrobacter freundii str. E2614 Replicon: plasmid 2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFE2614_RS25700 () | 317..1032 | - | 716 | Protein_1 | IS6 family transposase IS15DII | Transposase |
| CFE2614_RS25705 () | 1180..1967 | - | 788 | Protein_2 | Uxu operon transcriptional regulator | - |
| CFE2614_RS25710 () | 2185..3615 | - | 1431 | WP_022652293.1 | glucuronate isomerase | - |
| CFE2614_RS25715 () | 3635..5104 | - | 1470 | WP_022652294.1 | fructuronate reductase | - |
| CFE2614_RS25720 () | 5211..6395 | - | 1185 | WP_022652295.1 | mannonate dehydratase | - |
| CFE2614_RS25725 () | 6697..7962 | - | 1266 | WP_022652296.1 | glucuronide uptake porin UidC | - |
| CFE2614_RS25730 () | 8011..9384 | - | 1374 | WP_022652297.1 | glucuronide transporter | - |
| CFE2614_RS25735 () | 9381..11192 | - | 1812 | WP_022652298.1 | beta-glucuronidase | - |
| CFE2614_RS25740 () | 11569..12177 | + | 609 | WP_022652299.1 | TetR/AcrR family transcriptional regulator | - |
| CFE2614_RS25745 () | 12500..13480 | - | 981 | WP_016947617.1 | IS5 family transposase ISKpn26 | Transposase |
| CFE2614_RS25750 () | 13758..14039 | - | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| CFE2614_RS25755 () | 14020..14349 | - | 330 | WP_000493286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CFE2614_RS25760 () | 14768..15721 | - | 954 | WP_022652300.1 | IS110 family transposase IS4321R | Transposase |
| CFE2614_RS25765 () | 15918..16313 | - | 396 | Protein_14 | cytochrome C | - |
| CFE2614_RS25770 () | 16342..17052 | - | 711 | WP_022652302.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| CFE2614_RS25775 () | 17054..18259 | - | 1206 | WP_022652303.1 | ABC transporter permease | - |
| CFE2614_RS25780 () | 18256..19407 | - | 1152 | WP_022652304.1 | efflux RND transporter periplasmic adaptor subunit | - |
| CFE2614_RS25785 () | 19404..20012 | - | 609 | WP_004393990.1 | TetR/AcrR family transcriptional regulator | - |
| CFE2614_RS25790 () | 20200..21153 | + | 954 | WP_022652300.1 | IS110 family transposase IS4321R | Transposase |
| CFE2614_RS25800 () | 21744..22253 | + | 510 | WP_050483874.1 | sigma-70 family RNA polymerase sigma factor | - |
| CFE2614_RS25805 () | 22410..23411 | + | 1002 | Protein_21 | permease | - |
| CFE2614_RS25810 () | 23425..23655 | + | 231 | WP_021314637.1 | thioredoxin family protein | - |
| CFE2614_RS25815 () | 23933..24136 | - | 204 | WP_022652307.1 | hypothetical protein | - |
| CFE2614_RS25820 () | 24218..25045 | - | 828 | WP_032430841.1 | universal stress protein | - |
| CFE2614_RS25825 () | 25063..26541 | - | 1479 | WP_022652309.1 | SulP family inorganic anion transporter | - |
| CFE2614_RS25830 () | 27048..28070 | + | 1023 | WP_032430957.1 | IS110 family transposase IS1618 | Transposase |
| CFE2614_RS25835 () | 28362..28669 | - | 308 | Protein_27 | IS1 family transposase | - |
| CFE2614_RS25845 () | 29146..29886 | + | 741 | WP_022652310.1 | site-specific integrase | - |
| CFE2614_RS25850 () | 30212..31201 | - | 990 | WP_022652311.1 | RepB family plasmid replication initiator protein | - |
| CFE2614_RS25855 () | 32057..32326 | + | 270 | WP_022652312.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| CFE2614_RS25860 () | 32330..32860 | + | 531 | WP_022652313.1 | GNAT family N-acetyltransferase | Toxin Detail |
| CFE2614_RS25865 () | 32992..33885 | + | 894 | WP_077873527.1 | IS5 family transposase IS5D | Transposase |
| CFE2614_RS25870 () | 34026..34922 | - | 897 | Protein_33 | IS3 family transposase ISEhe3 | Transposase |
| CFE2614_RS25875 () | 34987..36138 | + | 1152 | WP_022652315.1 | IS30 family transposase IS30D | Transposase |
| CFE2614_RS25880 () | 36247..36630 | + | 384 | WP_001201739.1 | IS66 family transposase IS682 | Transposase |
| CFE2614_RS25885 () | 36627..36974 | + | 348 | WP_000609174.1 | IS66 family transposase ISCfr14 | Transposase |
| CFE2614_RS25890 () | 37024..38559 | + | 1536 | WP_001000409.1 | IS66 family transposase ISSgsp1 | Transposase |
| CFE2614_RS25895 () | 38616..39956 | - | 1341 | WP_008786676.1 | IS110 family transposase ISWpi13 | Transposase |
| CFE2614_RS25900 () | 40187..40429 | - | 243 | Protein_39 | IS3 family transposase ISEhe3 | Transposase |
| CFE2614_RS25905 () | 40800..41966 | + | 1167 | WP_022652317.1 | plasmid-partitioning protein SopA | - |
| CFE2614_RS25910 () | 41966..42931 | + | 966 | WP_022652318.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CFE2614_RS25915 () | 43664..44706 | - | 1043 | Protein_42 | translesion error-prone DNA polymerase V subunit UmuC | - |
| CFE2614_RS25920 () | 44960..47098 | + | 2139 | WP_022652236.1 | hypothetical protein | - |
| CFE2614_RS25925 () | 47432..48835 | + | 1404 | WP_072200700.1 | DNA cytosine methyltransferase | - |
| CFE2614_RS25930 () | 48869..50083 | - | 1215 | WP_022652238.1 | type II site-specific deoxyribonuclease | - |
| CFE2614_RS25935 () | 50232..52358 | - | 2127 | WP_022652239.1 | tyrosine-type recombinase/integrase | - |
| CFE2614_RS25940 () | 52342..53346 | - | 1005 | Protein_47 | tyrosine-type recombinase/integrase | - |
| CFE2614_RS25945 () | 53420..53647 | - | 228 | Protein_48 | DNA polymerase V subunit UmuC | - |
| CFE2614_RS25950 () | 53647..54069 | - | 423 | WP_022652242.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CFE2614_RS25955 () | 54249..54920 | - | 672 | WP_022652243.1 | SOS response-associated peptidase family protein | - |
| CFE2614_RS25960 () | 55280..55957 | + | 678 | WP_022652244.1 | DNA methylase | - |
| CFE2614_RS25965 () | 55957..56178 | + | 222 | WP_022652245.1 | hypothetical protein | - |
| CFE2614_RS25970 () | 56189..56608 | + | 420 | WP_016479994.1 | DUF1380 domain-containing protein | - |
| CFE2614_RS25975 () | 56662..57441 | + | 780 | WP_032430832.1 | hypothetical protein | - |
| CFE2614_RS25980 () | 57508..57711 | - | 204 | WP_042889371.1 | hypothetical protein | - |
| CFE2614_RS25985 () | 57848..58354 | + | 507 | WP_015062672.1 | antirestriction protein ArdA | - |
| CFE2614_RS25990 () | 58397..58588 | + | 192 | WP_022652248.1 | hypothetical protein | - |
| CFE2614_RS25995 () | 58780..59034 | + | 255 | WP_072200699.1 | DNA polymerase III subunit theta | - |
| CFE2614_RS26000 () | 59069..59386 | + | 318 | WP_032430831.1 | hypothetical protein | - |
| CFE2614_RS26005 () | 59509..59730 | - | 222 | WP_015062665.1 | hypothetical protein | - |
| CFE2614_RS26015 () | 60061..60615 | + | 555 | WP_020842505.1 | single-stranded DNA-binding protein | - |
| CFE2614_RS26020 () | 60668..60910 | + | 243 | WP_032430848.1 | DUF905 domain-containing protein | - |
| CFE2614_RS26025 () | 60981..63014 | + | 2034 | Protein_63 | ParB/RepB/Spo0J family partition protein | - |
| CFE2614_RS26030 () | 63055..63489 | + | 435 | WP_086538015.1 | conjugation system SOS inhibitor PsiB | - |
| CFE2614_RS26035 () | 63486..64214 | + | 729 | WP_032430829.1 | plasmid SOS inhibition protein A | - |
| CFE2614_RS26040 () | 64211..64564 | + | 354 | WP_020833567.1 | hypothetical protein | - |
| CFE2614_RS26045 () | 64918..65292 | + | 375 | WP_020833566.1 | hypothetical protein | - |
| CFE2614_RS26050 () | 66018..66422 | + | 405 | WP_032430828.1 | hypothetical protein | - |
| CFE2614_RS26055 () | 66479..66826 | + | 348 | WP_032430827.1 | hypothetical protein | - |
| CFE2614_RS26060 () | 66921..67067 | + | 147 | WP_001159045.1 | hypothetical protein | - |
| CFE2614_RS26065 () | 67114..67947 | + | 834 | WP_121926990.1 | type I restriction-modification system subunit M | - |
| CFE2614_RS26070 () | 68594..69124 | + | 531 | WP_032430825.1 | antirestriction protein | - |
| CFE2614_RS26075 () | 69135..69590 | - | 456 | WP_032430824.1 | hypothetical protein | VF |
| CFE2614_RS26080 () | 70059..70442 | + | 384 | WP_015062650.1 | relaxosome protein TraM | - |
| CFE2614_RS26085 () | 70739..71188 | + | 450 | WP_020833561.1 | helix-turn-helix domain-containing protein | - |
| CFE2614_RS26090 () | 71394..71627 | + | 234 | WP_032430823.1 | TraY domain-containing protein | - |
| CFE2614_RS26095 () | 71745..72104 | + | 360 | WP_032430822.1 | type IV conjugative transfer system pilin TraA | - |
| CFE2614_RS26100 () | 72106..72411 | + | 306 | WP_000398849.1 | type IV conjugative transfer system protein TraL | - |
| CFE2614_RS26105 () | 72431..72994 | + | 564 | WP_032430821.1 | type IV conjugative transfer system protein TraE | - |
| CFE2614_RS26110 () | 72984..73724 | + | 741 | WP_032430820.1 | type-F conjugative transfer system secretin TraK | - |
| CFE2614_RS26115 () | 73711..75072 | + | 1362 | WP_032430819.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| CFE2614_RS26120 () | 75182..75401 | + | 220 | Protein_82 | TraR/DksA C4-type zinc finger protein | - |
| CFE2614_RS26125 () | 75414..75866 | + | 453 | WP_032430818.1 | hypothetical protein | - |
| CFE2614_RS26130 () | 75884..76483 | + | 600 | WP_047715683.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CFE2614_RS26135 () | 76494..79085 | + | 2592 | WP_032430816.1 | type IV secretion system protein TraC | - |
| CFE2614_RS26140 () | 79082..79546 | + | 465 | WP_032430815.1 | type-F conjugative transfer system protein TrbI | - |
| CFE2614_RS26145 () | 79546..80181 | + | 636 | WP_032430814.1 | type-F conjugative transfer system protein TraW | - |
| CFE2614_RS26150 () | 80178..81173 | + | 996 | WP_032430813.1 | conjugal transfer pilus assembly protein TraU | - |
| CFE2614_RS26155 () | 81184..81552 | + | 369 | WP_032430812.1 | hypothetical protein | - |
| CFE2614_RS26160 () | 81549..82163 | + | 615 | WP_032430811.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CFE2614_RS26165 () | 82160..84013 | + | 1854 | WP_032430810.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CFE2614_RS26170 () | 84010..84789 | + | 780 | WP_071446640.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CFE2614_RS26175 () | 84815..85426 | + | 612 | WP_032430808.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CFE2614_RS26180 () | 85426..86787 | + | 1362 | WP_032430807.1 | F-type conjugal transfer protein TraH | - |
| CFE2614_RS26185 () | 86789..89686 | + | 2898 | WP_047715678.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CFE2614_RS26190 () | 89698..90258 | + | 561 | WP_047715676.1 | hypothetical protein | - |
| CFE2614_RS26195 () | 90434..91171 | + | 738 | WP_047715675.1 | complement resistance protein TraT | - |
| CFE2614_RS26200 () | 91322..93556 | + | 2235 | WP_047715674.1 | type IV conjugative transfer system coupling protein TraD | - |
| CFE2614_RS26205 () | 93556..98859 | + | 5304 | WP_121927054.1 | Multifunctional conjugation protein TraI | Relaxase |
| CFE2614_RS26210 () | 98878..99444 | + | 567 | WP_047715672.1 | DUF2726 domain-containing protein | - |
| CFE2614_RS26215 () | 99441..100172 | + | 732 | WP_071446724.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| CFE2614_RS26220 () | 100214..100567 | + | 354 | WP_047715670.1 | hypothetical protein | - |
| CFE2614_RS26225 () | 100716..101279 | + | 564 | WP_047715669.1 | Cardiolipin synthase A | VF |
| CFE2614_RS26230 () | 101411..101653 | + | 243 | WP_000078032.1 | replication regulatory protein RepA | - |
| CFE2614_RS26240 () | 101886..101963 | + | 78 | WP_071846009.1 | RepA leader peptide Tap | - |
| CFE2614_RS26245 () | 101956..102897 | + | 942 | WP_165690017.1 | replication initiator protein RepA | - |
| CFE2614_RS26250 () | 103472..103681 | - | 210 | Protein_107 | IS110 family transposase | - |
| CFE2614_RS26255 () | 103736..104433 | + | 698 | Protein_108 | IS1 family transposase IS1R | Transposase |
| CFE2614_RS26260 () | 104444..104830 | - | 387 | WP_121927065.1 | hypothetical protein | - |
| CFE2614_RS27435 () | 104873..105196 | - | 324 | WP_071446655.1 | hypothetical protein | - |
| CFE2614_RS26270 () | 105193..105630 | - | 438 | WP_071446654.1 | hypothetical protein | - |
| CFE2614_RS26275 () | 105630..106661 | - | 1032 | WP_071446653.1 | ParB/RepB/Spo0J family partition protein | - |
| CFE2614_RS26280 () | 106661..107527 | - | 867 | WP_071446652.1 | AAA family ATPase | - |
| CFE2614_RS26290 () | 108228..108494 | - | 267 | WP_081364728.1 | nuclease | - |
| CFE2614_RS26295 () | 108757..109260 | - | 504 | WP_071446649.1 | peptidase M14 | - |
| CFE2614_RS26300 () | 109683..110324 | + | 642 | WP_000497473.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| CFE2614_RS26305 () | 110362..110709 | + | 348 | WP_106108091.1 | hypothetical protein | - |
| CFE2614_RS26310 () | 110699..110952 | + | 254 | Protein_118 | hypothetical protein | - |
| CFE2614_RS26315 () | 111089..112027 | + | 939 | WP_008322195.1 | ISNCY family transposase ISRor2 | VF |
| CFE2614_RS26320 () | 112114..112908 | - | 795 | WP_008322197.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| CFE2614_RS26325 () | 113102..114010 | + | 909 | WP_059444920.1 | NAD(P)-dependent oxidoreductase | - |
| CFE2614_RS26330 () | 114007..114816 | + | 810 | Protein_122 | four-carbon acid sugar kinase family protein | - |
| CFE2614_RS26335 () | 114882..115586 | + | 705 | WP_082261900.1 | IS6 family transposase IS26 | Transposase |
| CFE2614_RS26340 () | 115620..118202 | - | 2583 | WP_082261901.1 | hypothetical protein | VF |
| CFE2614_RS26350 () | 118487..118663 | - | 177 | Protein_125 | IS6 family transposase IS15DI | Transposase |
| CFE2614_RS26355 () | 118719..119416 | + | 698 | Protein_126 | IS1 family transposase IS1R | Transposase |
| CFE2614_RS26360 () | 119434..119517 | + | 84 | Protein_127 | IS30 family transposase IS30D | Transposase |
| CFE2614_RS26365 () | 119570..119902 | - | 333 | Protein_128 | IS30 family transposase IS30D | Transposase |
| CFE2614_RS26370 () | 119970..120272 | - | 303 | Protein_129 | IS3 family transposase ISEc31 | Transposase |
| CFE2614_RS26375 () | 120293..120610 | - | 318 | WP_082261903.1 | hypothetical protein | - |
| CFE2614_RS26380 () | 120710..122392 | - | 1683 | WP_082261904.1 | hypothetical protein | VF |
| CFE2614_RS26385 () | 122532..124070 | - | 1539 | WP_004201219.1 | IS66 family transposase ISKpn24 | Transposase |
| CFE2614_RS26390 () | 124119..124466 | - | 348 | WP_021563201.1 | IS66 family transposase ISKpn24 | Transposase |
| CFE2614_RS26395 () | 124463..124867 | - | 405 | WP_003031976.1 | IS66 family transposase ISKpn24 | Transposase |
| CFE2614_RS26400 () | 125216..125920 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CFE2614_RS26410 () | 126395..127408 | - | 1014 | WP_000845054.1 | IS91 family transposase ISAzo26 | Transposase |
| CFE2614_RS26415 () | 127575..128375 | + | 801 | WP_013263789.1 | hypothetical protein | ARG |
| CFE2614_RS26420 () | 128483..129037 | + | 555 | WP_003159191.1 | aminoglycoside N-acetyltransferase AAC(6')-Ib4 | - |
| CFE2614_RS26425 () | 129107..129898 | + | 792 | WP_001206317.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CFE2614_RS26430 () | 130022..130369 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| CFE2614_RS26435 () | 130363..131202 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| CFE2614_RS26445 () | 131330..131830 | + | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| CFE2614_RS27440 () | 132151..132219 | + | 69 | Protein_143 | EAL domain-containing protein | - |
| CFE2614_RS26455 () | 132337..133101 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| CFE2614_RS26470 () | 133594..134178 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| CFE2614_RS26475 () | 134178..135416 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| CFE2614_RS26480 () | 135413..136318 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| CFE2614_RS26490 () | 136440..137144 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CFE2614_RS26495 () | 137377..138237 | + | 861 | WP_000557454.1 | SPbeta prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| CFE2614_RS26500 () | 138250..138792 | + | 543 | WP_000587837.1 | AAA family ATPase | - |
| CFE2614_RS26505 () | 139274..139465 | - | 192 | WP_000951934.1 | hypothetical protein | - |
| CFE2614_RS26510 () | 139489..139716 | + | 228 | WP_000248278.1 | hypothetical protein | - |
| CFE2614_RS26515 () | 139767..140903 | + | 1137 | WP_000080861.1 | DUF3883 domain-containing protein | - |
| CFE2614_RS26520 () | 141018..142388 | + | 1371 | WP_000971921.1 | IS1182 family transposase ISCfr1 | Transposase |
| CFE2614_RS26525 () | 143209..144069 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| CFE2614_RS26530 () | 144595..145599 | - | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| CFE2614_RS26535 () | 145678..148644 | - | 2967 | WP_001138070.1 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| CFE2614_RS26540 () | 148647..149207 | - | 561 | WP_003124096.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| CFE2614_RS26545 () | 149262..149966 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CFE2614_RS26550 () | 150114..150902 | - | 789 | WP_032430963.1 | Uxu operon transcriptional regulator | - |
| CFE2614_RS26555 () | 151120..152550 | - | 1431 | WP_022652293.1 | glucuronate isomerase | - |
| CFE2614_RS26560 () | 152570..154039 | - | 1470 | WP_022652294.1 | fructuronate reductase | - |
| CFE2614_RS26565 () | 154146..155330 | - | 1185 | WP_022652295.1 | mannonate dehydratase | - |
| CFE2614_RS26570 () | 155632..156897 | - | 1266 | WP_022652296.1 | glucuronide uptake porin UidC | - |
| CFE2614_RS26575 () | 156946..158319 | - | 1374 | WP_022652297.1 | glucuronide transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|