MGE detailed information
MGE type: Prophage MGE length: 46408 bp
Accession: NZ_LR898874 Location: 2629105..2675512 Organism: Escherichia coli isolate MSB1_4I-sc-2280412 Replicon: chromosome
Accession: NZ_LR898874 Location: 2629105..2675512 Organism: Escherichia coli isolate MSB1_4I-sc-2280412 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMX41_RS12780 () | 2625618..2626364 | + | 747 | WP_001296081.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| JMX41_RS12785 () | 2626453..2627139 | + | 687 | WP_000215553.1 | DNA-binding transcriptional regulator YdfH | - |
| JMX41_RS12790 () | 2627317..2627520 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| JMX41_RS12795 () | 2627556..2629016 | - | 1461 | WP_000527820.1 | mannitol dehydrogenase family protein | - |
| JMX41_RS12800 () | 2629105..2630388 | - | 1284 | Protein_2513 | MHS family MFS transporter YdfJ | - |
| JMX41_RS12805 () | 2630992..2631105 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| JMX41_RS12810 () | 2631174..2631407 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| JMX41_RS12815 () | 2631724..2632314 | + | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| JMX41_RS12820 () | 2632412..2632522 | - | 111 | Protein_2517 | tail fiber assembly protein | - |
| JMX41_RS12825 () | 2632542..2632835 | - | 294 | WP_000355609.1 | hypothetical protein | - |
| JMX41_RS12830 () | 2632846..2633550 | - | 705 | WP_000235980.1 | tail fiber domain-containing protein | - |
| JMX41_RS12835 () | 2633560..2633841 | - | 282 | WP_000654160.1 | hypothetical protein | - |
| JMX41_RS12840 () | 2633841..2636057 | - | 2217 | WP_201555648.1 | prophage tail fiber N-terminal domain-containing protein | - |
| JMX41_RS12845 () | 2636122..2636721 | - | 600 | WP_001233058.1 | Outer membrane protein X | VF |
| JMX41_RS12850 () | 2636789..2637625 | - | 837 | Protein_2523 | DUF1983 domain-containing protein | - |
| JMX41_RS12855 () | 2637637..2638542 | - | 906 | Protein_2524 | IS3 family transposase ISEc31 | Transposase |
| JMX41_RS12860 () | 2638607..2639758 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| JMX41_RS12865 () | 2639771..2640073 | - | 303 | Protein_2526 | IS3 family transposase ISEc31 | Transposase |
| JMX41_RS12870 () | 2640124..2640558 | - | 435 | WP_001571447.1 | phage tail assembly protein T | - |
| JMX41_RS12875 () | 2640540..2640962 | - | 423 | WP_001552795.1 | phage minor tail protein G | - |
| JMX41_RS12880 () | 2640978..2641718 | - | 741 | WP_016236242.1 | phage tail protein | - |
| JMX41_RS12885 () | 2641726..2642121 | - | 396 | WP_000683145.1 | phage minor tail U family protein | - |
| JMX41_RS12890 () | 2642118..2642696 | - | 579 | WP_001520551.1 | phage tail protein | - |
| JMX41_RS12895 () | 2642751..2643104 | - | 354 | WP_001535302.1 | head-tail joining protein | - |
| JMX41_RS12900 () | 2643116..2643511 | - | 396 | WP_000158916.1 | DNA-packaging protein FI | - |
| JMX41_RS12905 () | 2643553..2644578 | - | 1026 | WP_000063265.1 | major capsid protein | - |
| JMX41_RS12910 () | 2644634..2644966 | - | 333 | WP_001345004.1 | head decoration protein | - |
| JMX41_RS12915 () | 2644976..2646295 | - | 1320 | WP_151309650.1 | S49 family peptidase | - |
| JMX41_RS12920 () | 2646276..2647877 | - | 1602 | WP_016234376.1 | phage portal protein | - |
| JMX41_RS12925 () | 2647874..2648080 | - | 207 | WP_000198149.1 | gpW family protein | - |
| JMX41_RS12930 () | 2648077..2650002 | - | 1926 | WP_151309675.1 | phage terminase large subunit family protein | - |
| JMX41_RS12935 () | 2649977..2650522 | - | 546 | WP_000453576.1 | DNA-packaging protein | - |
| JMX41_RS12940 () | 2650911..2651144 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| JMX41_RS12945 () | 2651202..2651612 | + | 411 | WP_001571459.1 | DUF1398 domain-containing protein | - |
| JMX41_RS12950 () | 2651764..2651937 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| JMX41_RS12955 () | 2652109..2652264 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| JMX41_RS12960 () | 2652344..2652409 | - | 66 | WP_123005512.1 | hypothetical protein | - |
| JMX41_RS12965 () | 2652412..2652600 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| JMX41_RS12970 () | 2652611..2652823 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| JMX41_RS12975 () | 2653186..2653683 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| JMX41_RS12980 () | 2653680..2654213 | - | 534 | WP_021563006.1 | lysozyme | - |
| JMX41_RS12985 () | 2654210..2654521 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| JMX41_RS12990 () | 2654526..2654741 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| JMX41_RS12995 () | 2655495..2655710 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| JMX41_RS13000 () | 2656011..2656223 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| JMX41_RS13005 () | 2656278..2656367 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| JMX41_RS13010 () | 2656645..2657397 | - | 753 | WP_001571462.1 | antitermination protein | - |
| JMX41_RS13015 () | 2657411..2658460 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| JMX41_RS13020 () | 2658462..2658740 | - | 279 | WP_032147666.1 | hypothetical protein | - |
| JMX41_RS13025 () | 2658807..2659058 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| JMX41_RS13030 () | 2659275..2659430 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JMX41_RS13035 () | 2659502..2659789 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| JMX41_RS13040 () | 2659789..2660028 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| JMX41_RS13045 () | 2660053..2660358 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| JMX41_RS13050 () | 2660561..2660893 | + | 333 | WP_001301033.1 | protein FlxA | - |
| JMX41_RS13055 () | 2661330..2662643 | - | 1314 | WP_001571463.1 | ISNCY family transposase ISCARN112 | Transposase |
| JMX41_RS13060 () | 2663412..2663698 | - | 287 | Protein_2565 | hypothetical protein | - |
| JMX41_RS13065 () | 2664309..2664665 | - | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| JMX41_RS13070 () | 2664662..2665084 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| JMX41_RS13075 () | 2665125..2666090 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| JMX41_RS13080 () | 2666071..2666592 | - | 522 | WP_000705358.1 | hypothetical protein | - |
| JMX41_RS13085 () | 2666576..2666806 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| JMX41_RS13090 () | 2666890..2667297 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| JMX41_RS13095 () | 2667464..2667619 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| JMX41_RS13100 () | 2667779..2667997 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| JMX41_RS13105 () | 2668565..2668753 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| JMX41_RS13110 () | 2668750..2668941 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| JMX41_RS13115 () | 2669034..2670161 | + | 1128 | WP_021563005.1 | hypothetical protein | - |
| JMX41_RS13125 () | 2671433..2672251 | + | 819 | Protein_2578 | Outer membrane usher protein FimD | VF |
| JMX41_RS13130 () | 2672265..2672795 | + | 531 | WP_000876782.1 | Protein FimF | VF |
| JMX41_RS13135 () | 2672808..2673311 | + | 504 | WP_000825465.1 | Protein FimG | VF |
| JMX41_RS13140 () | 2673371..2674171 | + | 801 | Protein_2581 | Type 1 fimbrin D-mannose specific adhesin | VF |
| JMX41_RS13145 () | 2674184..2675530 | - | 1347 | WP_000483766.1 | IS4 family transposase IS4 | Transposase |
| JMX41_RS13150 () | 2675616..2677262 | - | 1647 | WP_000066639.1 | class I fumarate hydratase | - |
| JMX41_RS13155 () | 2677461..2678636 | + | 1176 | WP_001170681.1 | mannose-6-phosphate isomerase | - |
| JMX41_RS13160 () | 2678737..2680245 | + | 1509 | WP_001043391.1 | YdgA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|