MGE detailed information
MGE type: Genomic_island MGE length: 12810 bp
Accession: NZ_LR890606 Location: 2402513..2415322 Organism: Escherichia coli isolate MINF_8D-sc-2280460 Replicon: chromosome
Accession: NZ_LR890606 Location: 2402513..2415322 Organism: Escherichia coli isolate MINF_8D-sc-2280460 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW69_RS11535 () | 2402513..2402779 | + | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| JMW69_RS11540 () | 2402779..2404101 | + | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| JMW69_RS11545 () | 2404413..2404621 | + | 209 | Protein_2258 | helix-turn-helix transcriptional regulator | - |
| JMW69_RS11550 () | 2404876..2406102 | + | 1227 | Protein_2259 | Outer membrane usher protein FimD | VF |
| JMW69_RS11555 () | 2406116..2406646 | + | 531 | WP_000876763.1 | Protein FimF | VF |
| JMW69_RS11560 () | 2406659..2407162 | + | 504 | WP_000825452.1 | Protein FimG | VF |
| JMW69_RS11565 () | 2407221..2408135 | + | 915 | WP_000520676.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| JMW69_RS11570 () | 2408469..2410748 | + | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| JMW69_RS11575 () | 2410996..2411193 | + | 198 | WP_000543384.1 | two-component system connector SafA | - |
| JMW69_RS11580 () | 2411268..2412029 | + | 762 | WP_000060492.1 | acid stress response transcriptional regulator YdeO | - |
| JMW69_RS11585 () | 2412431..2414113 | + | 1683 | WP_001295684.1 | sulfatase | - |
| JMW69_RS11590 () | 2414165..2415322 | + | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| JMW69_RS11595 () | 2415288..2415410 | - | 123 | WP_120795387.1 | protein YneP | - |
| JMW69_RS11600 () | 2415613..2416548 | + | 936 | Protein_2269 | ABC transporter ATP-binding protein/permease | - |
| JMW69_RS11610 () | 2417810..2418559 | + | 750 | Protein_2271 | ABC transporter ATP-binding protein/permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.004 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.006 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.004 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.004 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.004 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.004 |