MGE detailed information
MGE type: Genomic_island MGE length: 13876 bp
Accession: NZ_LR890288 Location: 2380797..2394672 Organism: Escherichia coli isolate MSB1_1A-sc-2280383 Replicon: chromosome
Accession: NZ_LR890288 Location: 2380797..2394672 Organism: Escherichia coli isolate MSB1_1A-sc-2280383 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW08_RS11365 () | 2380797..2381063 | + | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| JMW08_RS11370 () | 2381063..2382385 | + | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| JMW08_RS11375 () | 2382697..2382905 | + | 209 | Protein_2223 | helix-turn-helix transcriptional regulator | - |
| JMW08_RS11380 () | 2383160..2384386 | + | 1227 | Protein_2224 | Outer membrane usher protein FimD | VF |
| JMW08_RS11385 () | 2384400..2384930 | + | 531 | WP_000876763.1 | Protein FimF | VF |
| JMW08_RS11390 () | 2384943..2385446 | + | 504 | WP_000825452.1 | Protein FimG | VF |
| JMW08_RS11395 () | 2385505..2386419 | + | 915 | WP_000520662.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| JMW08_RS11400 () | 2386753..2389032 | + | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| JMW08_RS11405 () | 2389280..2389477 | + | 198 | WP_000543384.1 | two-component system connector SafA | - |
| JMW08_RS11410 () | 2389552..2390313 | + | 762 | WP_000060492.1 | acid stress response transcriptional regulator YdeO | - |
| JMW08_RS11415 () | 2390715..2391401 | + | 687 | Protein_2231 | sulfatase | - |
| JMW08_RS11420 () | 2391459..2392427 | - | 969 | WP_000654804.1 | IS5 family transposase IS903B | Transposase |
| JMW08_RS11425 () | 2392462..2393463 | + | 1002 | Protein_2233 | hypothetical protein | VF |
| JMW08_RS11430 () | 2393515..2394672 | + | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| JMW08_RS11435 () | 2394638..2394760 | - | 123 | WP_120795387.1 | protein YneP | - |
| JMW08_RS11440 () | 2394963..2396648 | + | 1686 | WP_000628576.1 | ABC transporter ATP-binding protein/permease | - |
| JMW08_RS11445 () | 2396686..2399058 | + | 2373 | WP_201522884.1 | TonB-dependent receptor plug domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.006 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.006 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.008 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.006 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.006 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.006 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.006 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.006 |