MGE detailed information
MGE type: Conjugative plasmid MGE length: 99448 bp
Accession: NZ_LR882999 Location: 1..99448 Organism: Escherichia coli isolate L3_E36_ETEC Replicon: plasmid 3
Accession: NZ_LR882999 Location: 1..99448 Organism: Escherichia coli isolate L3_E36_ETEC Replicon: plasmid 3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL022_RS27350 () | 1..873 | + | 873 | WP_000729438.1 | incFII family plasmid replication initiator RepA | - |
| JL022_RS27355 () | 1778..2062 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| JL022_RS27360 () | 2062..2337 | + | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JL022_RS27365 () | 2594..3802 | - | 1209 | WP_001695118.1 | IS91 family transposase ISSbo1 | Transposase |
| JL022_RS27370 () | 3783..4055 | - | 273 | WP_001695087.1 | hypothetical protein | - |
| JL022_RS27375 () | 4183..5391 | + | 1209 | WP_001352368.1 | IS4 family transposase IS10R | Transposase |
| JL022_RS27380 () | 5407..5526 | - | 120 | Protein_6 | LysR family transcriptional regulator | - |
| JL022_RS27385 () | 5757..6962 | - | 1206 | WP_000599533.1 | sodium/glutamate symporter | - |
| JL022_RS27390 () | 7406..7726 | + | 321 | WP_000562370.1 | antibiotic biosynthesis monooxygenase | - |
| JL022_RS27395 () | 7719..8105 | + | 387 | WP_000460651.1 | hypothetical protein | - |
| JL022_RS27400 () | 8113..8799 | + | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| JL022_RS27405 () | 8777..9400 | - | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| JL022_RS27410 () | 9482..10687 | + | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| JL022_RS27415 () | 10800..11393 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| JL022_RS27420 () | 11526..11897 | + | 372 | WP_035689358.1 | Transposon Tn10 TetD protein | VF |
| JL022_RS27425 () | 11907..13115 | - | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| JL022_RS27430 () | 13313..13594 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| JL022_RS27435 () | 13785..14051 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| JL022_RS27440 () | 14189..14791 | - | 603 | WP_000521606.1 | hypothetical protein | - |
| JL022_RS27445 () | 14967..16019 | - | 1053 | WP_000655519.1 | hypothetical protein | - |
| JL022_RS27450 () | 16232..16822 | - | 591 | WP_001401589.1 | hypothetical protein | - |
| JL022_RS27455 () | 16822..17076 | - | 255 | WP_000343106.1 | hypothetical protein | - |
| JL022_RS27460 () | 17344..18843 | + | 1500 | WP_200995776.1 | RES family NAD+ phosphorylase | - |
| JL022_RS27465 () | 18868..19731 | - | 864 | WP_000654832.1 | hypothetical protein | - |
| JL022_RS27470 () | 20255..20569 | + | 315 | WP_001302628.1 | hypothetical protein | - |
| JL022_RS27475 () | 20622..21401 | + | 780 | WP_000535297.1 | hypothetical protein | - |
| JL022_RS27480 () | 21452..22231 | + | 780 | WP_001302707.1 | site-specific integrase | - |
| JL022_RS27485 () | 22369..22644 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| JL022_RS27490 () | 22638..23282 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| JL022_RS27495 () | 23511..24482 | + | 972 | WP_063269679.1 | plasmid segregation protein parM | - |
| JL022_RS27500 () | 24487..24879 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| JL022_RS27505 () | 24884..26155 | - | 1272 | WP_000457496.1 | Y-family DNA polymerase | - |
| JL022_RS27510 () | 26155..26592 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JL022_RS27515 () | 26589..26837 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| JL022_RS27520 () | 27256..28158 | + | 903 | WP_001330417.1 | DUF1281 domain-containing protein | - |
| JL022_RS27525 () | 28155..28467 | + | 313 | Protein_35 | hypothetical protein | - |
| JL022_RS27530 () | 28543..29226 | + | 684 | WP_000086137.1 | DNA methylase | - |
| JL022_RS27535 () | 29227..29448 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| JL022_RS27540 () | 29462..29896 | + | 435 | WP_000274421.1 | DUF1380 family protein | - |
| JL022_RS27545 () | 29941..30711 | + | 771 | WP_001006204.1 | hypothetical protein | - |
| JL022_RS27550 () | 31249..31551 | + | 303 | WP_072105978.1 | antirestriction protein | - |
| JL022_RS27555 () | 31598..32020 | + | 423 | WP_000271732.1 | DUF1380 family protein | - |
| JL022_RS27560 () | 32017..32208 | + | 192 | WP_001024838.1 | hypothetical protein | - |
| JL022_RS27565 () | 32279..32593 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| JL022_RS27570 () | 32977..33504 | + | 528 | WP_021532391.1 | single-stranded DNA-binding protein | - |
| JL022_RS27575 () | 33562..33795 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| JL022_RS27580 () | 33854..35812 | + | 1959 | WP_097507768.1 | ParB/RepB/Spo0J family partition protein | - |
| JL022_RS27585 () | 35867..36301 | + | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| JL022_RS27590 () | 36298..37017 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| JL022_RS27595 () | 37014..37609 | + | 596 | Protein_49 | hypothetical protein | - |
| JL022_RS27600 () | 38071..38571 | + | 501 | WP_014065718.1 | antirestriction protein ArdA | - |
| JL022_RS27605 () | 39303..39737 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| JL022_RS27610 () | 39830..40096 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| JL022_RS27615 () | 40273..40662 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| JL022_RS27620 () | 40659..41573 | + | 915 | WP_000038334.1 | Recombination-promoting nuclease RpnA | VF |
| JL022_RS27625 () | 41573..41818 | + | 246 | WP_021577253.1 | hypothetical protein | - |
| JL022_RS27630 () | 41849..42100 | - | 252 | WP_000148280.1 | helix-turn-helix domain-containing protein | - |
| JL022_RS27635 () | 42134..42331 | - | 198 | WP_024189120.1 | hypothetical protein | - |
| JL022_RS27640 () | 42679..43527 | + | 849 | WP_001077044.1 | DUF4942 domain-containing protein | - |
| JL022_RS27645 () | 43613..43948 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| JL022_RS27650 () | 44181..44513 | + | 333 | WP_001291058.1 | hypothetical protein | - |
| JL022_RS27655 () | 44525..47236 | + | 2712 | WP_021577252.1 | Protein TraI | Relaxase |
| JL022_RS27660 () | 47304..47735 | + | 432 | WP_001335086.1 | hypothetical protein | - |
| JL022_RS27665 () | 47833..48063 | - | 231 | WP_065406859.1 | hypothetical protein | - |
| JL022_RS27670 () | 48530..50833 | - | 2304 | WP_021577250.1 | TraM recognition domain-containing protein | - |
| JL022_RS27675 () | 50814..51938 | - | 1125 | WP_000152386.1 | DsbC family protein | - |
| JL022_RS27680 () | 51935..53233 | - | 1299 | WP_001402878.1 | IncI1-type conjugal transfer protein TrbA | - |
| JL022_RS27685 () | 53874..54128 | + | 255 | WP_085448016.1 | hypothetical protein | - |
| JL022_RS27690 () | 54188..54364 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| JL022_RS27695 () | 54514..54981 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| JL022_RS27700 () | 55139..55762 | + | 624 | WP_001155247.1 | DNA-binding protein | - |
| JL022_RS27705 () | 55960..56175 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| JL022_RS27710 () | 56179..56547 | - | 369 | WP_001345852.1 | hypothetical protein | - |
| JL022_RS27715 () | 56559..56750 | - | 192 | WP_000751583.1 | hypothetical protein | - |
| JL022_RS27720 () | 56838..57080 | - | 243 | WP_000650923.1 | hypothetical protein | - |
| JL022_RS27725 () | 57410..57562 | + | 153 | WP_001335079.1 | Hok/Gef family protein | - |
| JL022_RS27730 () | 57700..59286 | - | 1587 | WP_094259306.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| JL022_RS27735 () | 59560..60213 | - | 654 | WP_001401768.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| JL022_RS27740 () | 60301..62466 | - | 2166 | WP_000691808.1 | DotA/TraY family protein | - |
| JL022_RS27745 () | 62541..63110 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| JL022_RS27750 () | 63107..64312 | - | 1206 | WP_001189547.1 | conjugal transfer protein TraW | - |
| JL022_RS27755 () | 64270..64890 | - | 621 | WP_000286854.1 | hypothetical protein | - |
| JL022_RS27760 () | 64890..67934 | - | 3045 | WP_001024766.1 | conjugal transfer protein | - |
| JL022_RS27765 () | 68159..68704 | + | 546 | WP_001390888.1 | hypothetical protein | - |
| JL022_RS27770 () | 68677..69057 | - | 381 | WP_000690881.1 | hypothetical protein | - |
| JL022_RS27775 () | 69057..69416 | - | 360 | WP_000380400.1 | hypothetical protein | - |
| JL022_RS27780 () | 69471..70289 | - | 819 | WP_200995774.1 | conjugal transfer protein TraT | - |
| JL022_RS27785 () | 70204..70455 | - | 252 | WP_001277573.1 | hypothetical protein | - |
| JL022_RS27790 () | 70512..70910 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| JL022_RS27795 () | 70957..71484 | - | 528 | WP_001407937.1 | conjugal transfer protein TraQ | - |
| JL022_RS27800 () | 71484..72197 | - | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| JL022_RS27805 () | 72194..73525 | - | 1332 | WP_052984758.1 | conjugal transfer protein TraO | - |
| JL022_RS27810 () | 73529..74488 | - | 960 | WP_061103461.1 | hypothetical protein | VF |
| JL022_RS27815 () | 74499..75194 | - | 696 | WP_001681668.1 | DotI/IcmL family type IV secretion protein | - |
| JL022_RS27820 () | 75206..75556 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| JL022_RS27825 () | 75573..79634 | - | 4062 | WP_061103460.1 | DNA primase | - |
| JL022_RS27830 () | 79698..79988 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| JL022_RS27835 () | 79985..81133 | - | 1149 | WP_000775210.1 | putative protein YggR | VF |
| JL022_RS27840 () | 81117..81953 | - | 837 | WP_089502857.1 | hypothetical protein | VF |
| JL022_RS27845 () | 81950..82408 | - | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| JL022_RS27850 () | 82512..83714 | - | 1203 | WP_000979993.1 | conjugal transfer protein TraF | - |
| JL022_RS27855 () | 83816..84637 | - | 822 | WP_001681675.1 | hypothetical protein | - |
| JL022_RS27860 () | 85110..86471 | - | 1362 | WP_001168171.1 | hypothetical protein | VF |
| JL022_RS27865 () | 86489..87115 | - | 627 | WP_000939245.1 | prepilin peptidase | - |
| JL022_RS27870 () | 87131..87616 | - | 486 | WP_052979773.1 | hypothetical protein | VF |
| JL022_RS27875 () | 87661..88197 | - | 537 | WP_000111521.1 | hypothetical protein | VF |
| JL022_RS27880 () | 88259..89353 | - | 1095 | WP_032253914.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| JL022_RS27885 () | 89355..90863 | - | 1509 | WP_000880806.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| JL022_RS27890 () | 90967..91425 | - | 459 | WP_000095886.1 | hypothetical protein | VF |
| JL022_RS27895 () | 91415..92713 | - | 1299 | WP_200995775.1 | type 4b pilus protein PilO2 | - |
| JL022_RS27900 () | 92734..94351 | - | 1618 | Protein_110 | hypothetical protein | VF |
| JL022_RS27905 () | 94383..94820 | - | 438 | WP_000539952.1 | hypothetical protein | VF |
| JL022_RS27910 () | 94824..95894 | - | 1071 | WP_000730430.1 | hypothetical protein | VF |
| JL022_RS27915 () | 96135..96455 | - | 321 | WP_001447108.1 | hypothetical protein | - |
| JL022_RS27920 () | 96571..96813 | - | 243 | WP_021515452.1 | PilI type IV pilus biogenesis protein | - |
| JL022_RS27925 () | 96894..97037 | - | 144 | WP_000176500.1 | hypothetical protein | - |
| JL022_RS27930 () | 97304..97966 | - | 663 | WP_005082527.1 | hypothetical protein | - |
| JL022_RS27935 () | 98106..98747 | - | 642 | WP_021515453.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|