MGE detailed information
MGE type: Prophage MGE length: 97658 bp
Accession: NZ_LR878365 Location: 3458709..3556366 Organism: Shigella flexneri 3a isolate 83 Replicon: chromosome
Accession: NZ_LR878365 Location: 3458709..3556366 Organism: Shigella flexneri 3a isolate 83 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV05_RS17630 (3456418) | 3456418..3457599 | + | 1182 | WP_005066440.1 | MFS transporter AraJ | - |
| JMV05_RS17635 (3457742) | 3457742..3458650 | - | 909 | WP_001219327.1 | fructokinase | - |
| JMV05_RS17640 (3458775) | 3458775..3459686 | + | 912 | WP_005066439.1 | recombination-associated protein RdgC | - |
| JMV05_RS17645 (3459764) | 3459764..3460219 | - | 456 | WP_032327098.1 | hypothetical protein | - |
| JMV05_RS17650 (3460216) | 3460216..3460569 | - | 354 | Protein_3446 | DUF2773 domain-containing protein | - |
| JMV05_RS17655 (3460622) | 3460622..3461319 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| JMV05_RS17660 (3461483) | 3461483..3461767 | - | 285 | WP_000941942.1 | pyrimidine/purine nucleoside phosphorylase | - |
| JMV05_RS17665 (3461839) | 3461839..3462516 | - | 678 | WP_001276420.1 | AroM family protein | - |
| JMV05_RS17670 (3462774) | 3462774..3462965 | - | 192 | WP_001142439.1 | protein YaiA | - |
| JMV05_RS17675 (3463015) | 3463015..3463539 | - | 525 | WP_000193391.1 | shikimate kinase AroL | - |
| JMV05_RS17680 (3463722) | 3463722..3464180 | - | 459 | WP_000158159.1 | YaiI/YqxD family protein | - |
| JMV05_RS17685 (3464300) | 3464300..3465109 | + | 810 | WP_005066432.1 | pyrroline-5-carboxylate reductase | - |
| JMV05_RS17690 (3465126) | 3465126..3466241 | - | 1116 | WP_024259952.1 | diguanylate cyclase AdrA | - |
| JMV05_RS17695 (3466392) | 3466392..3467605 | + | 1214 | WP_171763904.1 | IS3 family transposase IS629 | Transposase |
| JMV05_RS17700 (3467656) | 3467656..3467976 | - | 321 | WP_001295332.1 | phosphate starvation-inducible protein PsiF | - |
| JMV05_RS17705 (3468095) | 3468095..3469509 | - | 1415 | Protein_3457 | alkaline phosphatase | - |
| JMV05_RS17710 (3469610) | 3469610..3469870 | - | 261 | WP_000793082.1 | anti-adapter protein IraP | - |
| JMV05_RS17715 (3470052) | 3470052..3470255 | - | 204 | WP_023517632.1 | hypothetical protein | - |
| JMV05_RS17720 (3470333) | 3470333..3471427 | + | 1095 | WP_025759822.1 | D-alanine--D-alanine ligase | - |
| JMV05_RS17725 (3471451) | 3471451..3471663 | - | 213 | WP_001599861.1 | DUF2754 domain-containing protein | - |
| JMV05_RS17730 (3471923) | 3471923..3472231 | + | 309 | WP_000763148.1 | YaiY family protein | - |
| JMV05_RS17735 (3472290) | 3472290..3473384 | - | 1095 | WP_000092037.1 | surface-exposed outer membrane lipoprotein YaiW | - |
| JMV05_RS17740 (3473397) | 3473397..3474617 | - | 1221 | WP_001342332.1 | peptide antibiotic transporter SbmA | - |
| JMV05_RS17745 (3474969) | 3474969..3476126 | + | 1158 | WP_000830735.1 | D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH | - |
| JMV05_RS17750 (3476127) | 3476127..3476630 | - | 504 | WP_000953938.1 | helix-turn-helix domain-containing protein | - |
| JMV05_RS17755 (3476749) | 3476749..3477446 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| JMV05_RS17760 (3477494) | 3477494..3478021 | - | 528 | Protein_3468 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| JMV05_RS17770 (3479252) | 3479252..3479785 | - | 534 | Protein_3470 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| JMV05_RS17780 (3481113) | 3481113..3481481 | - | 369 | Protein_3472 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| JMV05_RS17785 (3482007) | 3482007..3482981 | + | 975 | WP_001295337.1 | porphobilinogen synthase | - |
| JMV05_RS17790 (3483087) | 3483087..3483938 | - | 852 | Protein_3474 | taurine dioxygenase | - |
| JMV05_RS17795 (3483935) | 3483935..3484762 | - | 828 | WP_119182157.1 | taurine ABC transporter permease TauC | - |
| JMV05_RS17800 (3484759) | 3484759..3485526 | - | 768 | WP_000939366.1 | Taurine import ATP-binding protein TauB | VF |
| JMV05_RS17805 (3485539) | 3485539..3486234 | - | 696 | Protein_3477 | taurine ABC transporter substrate-binding protein | - |
| JMV05_RS17815 (3487481) | 3487481..3487717 | - | 237 | Protein_3479 | ABC transporter substrate-binding protein | - |
| JMV05_RS17820 (3487984) | 3487984..3488490 | - | 507 | WP_025759213.1 | hypothetical protein | - |
| JMV05_RS17830 (3489600) | 3489600..3490295 | - | 696 | WP_000370403.1 | lactate utilization protein C | - |
| JMV05_RS17835 (3490288) | 3490288..3491715 | - | 1428 | WP_000023919.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| JMV05_RS17840 (3491726) | 3491726..3492445 | - | 720 | WP_001102119.1 | (Fe-S)-binding protein | - |
| JMV05_RS17845 (3492864) | 3492864..3493561 | + | 698 | WP_225620341.1 | IS1 family transposase IS1X2 | Transposase |
| JMV05_RS17850 (3494276) | 3494276..3495325 | - | 1050 | WP_000282633.1 | acyltransferase family protein | - |
| JMV05_RS17855 (3495651) | 3495651..3495736 | - | 86 | Protein_3487 | hypothetical protein | - |
| JMV05_RS17860 (3496044) | 3496044..3496982 | - | 939 | WP_216088272.1 | hypothetical protein | - |
| JMV05_RS17865 (3497323) | 3497323..3498240 | - | 918 | WP_001524120.1 | Prophage bactoprenol glucosyl transferase | VF |
| JMV05_RS17870 (3498344) | 3498344..3499512 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| JMV05_RS17875 (3499520) | 3499520..3500558 | + | 1039 | Protein_3491 | IS3 family transposase ISSd1 | Transposase |
| JMV05_RS17880 (3500916) | 3500916..3501278 | + | 363 | WP_000915539.1 | bactoprenol glucosyl transferase | - |
| JMV05_RS17885 (3501275) | 3501275..3502192 | + | 918 | WP_000703648.1 | Prophage bactoprenol glucosyl transferase | VF |
| JMV05_RS17890 (3502292) | 3502292..3503470 | + | 1179 | WP_236743541.1 | glucosyl transferase | - |
| JMV05_RS17895 (3503537) | 3503537..3505249 | - | 1713 | WP_225620342.1 | phage head-binding domain-containing protein | - |
| JMV05_RS17900 (3505371) | 3505371..3505631 | + | 261 | WP_000287051.1 | Arc family DNA-binding protein | - |
| JMV05_RS17905 (3505649) | 3505649..3506608 | - | 960 | Protein_3497 | hypothetical protein | - |
| JMV05_RS17910 (3506681) | 3506681..3507849 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| JMV05_RS17915 (3507860) | 3507860..3508888 | + | 1029 | Protein_3499 | Tyrosine recombinase XerC ; Integrase | Integrase |
| JMV05_RS17925 (3509093) | 3509093..3510346 | - | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| JMV05_RS17930 (3510358) | 3510358..3511461 | - | 1104 | WP_001285280.1 | glutamate 5-kinase | - |
| JMV05_RS17935 (3511749) | 3511749..3512804 | + | 1056 | WP_000749862.1 | phosphoporin PhoE | - |
| JMV05_RS17940 (3512843) | 3512843..3513244 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3513962) | 3513962..3514042 | - | 81 | NuclAT_7 | - | - |
| - (3513962) | 3513962..3514042 | - | 81 | NuclAT_7 | - | - |
| - (3513962) | 3513962..3514042 | - | 81 | NuclAT_7 | - | - |
| - (3513962) | 3513962..3514042 | - | 81 | NuclAT_7 | - | - |
| JMV05_RS17945 (3513302) | 3513302..3514546 | - | 1245 | WP_000189558.1 | esterase FrsA | - |
| JMV05_RS17950 (3514638) | 3514638..3515096 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| JMV05_RS17955 (3515358) | 3515358..3516815 | + | 1458 | WP_025759252.1 | cytosol nonspecific dipeptidase | - |
| JMV05_RS17960 (3516872) | 3516872..3517432 | - | 561 | Protein_3507 | peptide chain release factor H | - |
| JMV05_RS17965 (3517548) | 3517548..3518592 | - | 1045 | Protein_3508 | RNA ligase RtcB family protein | - |
| JMV05_RS17970 (3518838) | 3518838..3519290 | - | 453 | WP_001059862.1 | GNAT family N-acetyltransferase | - |
| JMV05_RS17980 (3520055) | 3520055..3520474 | - | 420 | WP_001263492.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| JMV05_RS17985 (3520477) | 3520477..3520770 | - | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| JMV05_RS17990 (3520822) | 3520822..3521877 | - | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| JMV05_RS17995 (3521948) | 3521948..3522733 | - | 786 | WP_000207560.1 | Chemotaxis protein LafU | VF |
| JMV05_RS18000 (3522705) | 3522705..3524417 | + | 1713 | Protein_3515 | Flagellar biosynthesis protein FlhA | VF |
| JMV05_RS18005 (3524634) | 3524634..3525131 | - | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| JMV05_RS18010 (3525307) | 3525307..3525828 | - | 522 | Protein_3517 | hypothetical protein | VF |
| JMV05_RS18015 (3526212) | 3526212..3526952 | + | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| JMV05_RS18020 (3526923) | 3526923..3527690 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| JMV05_RS18025 (3527896) | 3527896..3528474 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| JMV05_RS18030 (3528713) | 3528713..3531157 | + | 2445 | WP_040236298.1 | Acyl-coenzyme A dehydrogenase | VF |
| JMV05_RS18035 (3531200) | 3531200..3531646 | - | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| JMV05_RS18040 (3531827) | 3531827..3532597 | + | 771 | WP_001139559.1 | 2-oxoglutaramate amidase | - |
| JMV05_RS18045 (3532707) | 3532707..3532939 | + | 233 | Protein_3524 | type I toxin-antitoxin system SymE family toxin | - |
| JMV05_RS18050 (3533005) | 3533005..3533241 | - | 237 | WP_032320155.1 | hypothetical protein | - |
| JMV05_RS18060 (3534119) | 3534119..3534322 | - | 204 | WP_128567422.1 | hypothetical protein | - |
| JMV05_RS18065 (3534422) | 3534422..3534796 | - | 375 | WP_225620343.1 | RHS repeat-associated core domain-containing protein | - |
| JMV05_RS18070 (3534765) | 3534765..3535085 | - | 321 | WP_225620351.1 | hypothetical protein | - |
| JMV05_RS18075 (3535277) | 3535277..3537755 | - | 2479 | Protein_3530 | DUF6531 domain-containing protein | - |
| JMV05_RS18080 (3537752) | 3537752..3538159 | - | 408 | WP_005053237.1 | PAAR domain-containing protein | - |
| JMV05_RS18085 (3538182) | 3538182..3538394 | - | 213 | WP_072075142.1 | DcrB-related protein | - |
| JMV05_RS18090 (3538360) | 3538360..3538626 | - | 267 | WP_025757872.1 | DcrB-related protein | - |
| JMV05_RS18095 (3538649) | 3538649..3540861 | - | 2213 | Protein_3534 | hypothetical protein | VF |
| JMV05_RS18100 (3540886) | 3540886..3541272 | - | 387 | WP_025757874.1 | hypothetical protein | - |
| JMV05_RS18105 (3541269) | 3541269..3541754 | - | 486 | WP_025757876.1 | hypothetical protein | - |
| JMV05_RS18120 (3543981) | 3543981..3544280 | + | 300 | WP_000804009.1 | FHA domain-containing protein | - |
| JMV05_RS18125 (3544262) | 3544262..3544894 | + | 633 | WP_225620345.1 | type VI secretion system-associated protein TagK | - |
| JMV05_RS18130 (3544881) | 3544881..3545711 | + | 831 | WP_000183809.1 | hypothetical protein | VF |
| JMV05_RS18135 (3545708) | 3545708..3546202 | + | 495 | WP_001276640.1 | hypothetical protein | VF |
| JMV05_RS18140 (3546218) | 3546218..3548101 | + | 1884 | Protein_3543 | type VI secretion system baseplate subunit TssF | - |
| JMV05_RS18145 (3548098) | 3548098..3549093 | + | 996 | Protein_3544 | hypothetical protein | VF |
| JMV05_RS18150 (3549104) | 3549104..3550150 | + | 1047 | WP_000402248.1 | hypothetical protein | VF |
| JMV05_RS18160 (3550490) | 3550490..3551221 | - | 732 | WP_001366128.1 | DNA polymerase III subunit epsilon | - |
| JMV05_RS18165 (3551286) | 3551286..3551753 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| JMV05_RS18170 (3551750) | 3551750..3552472 | - | 723 | WP_025759002.1 | class I SAM-dependent methyltransferase | - |
| JMV05_RS18175 (3552506) | 3552506..3553261 | + | 756 | WP_001052755.1 | hydroxyacylglutathione hydrolase | - |
| JMV05_RS18180 (3553333) | 3553333..3554691 | + | 1359 | WP_000644685.1 | Membrane-bound lytic murein transglycosylase D | VF |
| JMV05_RS18185 (3554739) | 3554739..3555509 | - | 771 | WP_000211684.1 | class I SAM-dependent methyltransferase | - |
| JMV05_RS18190 (3555587) | 3555587..3556387 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| JMV05_RS18195 (3556609) | 3556609..3557525 | + | 917 | Protein_3553 | DNA-binding transcriptional regulator YafC | - |
| JMV05_RS18200 (3557575) | 3557575..3558926 | + | 1352 | Protein_3554 | IS4-like element IS4 family transposase | - |
| JMV05_RS18205 (3558965) | 3558965..3559768 | - | 804 | WP_152030441.1 | 2,5-didehydrogluconate reductase DkgB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|