MGE detailed information
MGE type: Prophage MGE length: 77996 bp
Accession: NZ_LR878365 Location: 3061665..3139660 Organism: Shigella flexneri 3a isolate 83 Replicon: chromosome
Accession: NZ_LR878365 Location: 3061665..3139660 Organism: Shigella flexneri 3a isolate 83 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV05_RS15585 (3057975) | 3057975..3058652 | - | 678 | WP_025759439.1 | dethiobiotin synthase | - |
| JMV05_RS15590 (3058645) | 3058645..3059400 | - | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| JMV05_RS15595 (3059387) | 3059387..3060541 | - | 1155 | WP_152030410.1 | 8-amino-7-oxononanoate synthase | - |
| JMV05_RS15600 (3060538) | 3060538..3061578 | - | 1041 | WP_000951214.1 | biotin synthase BioB | - |
| JMV05_RS15605 (3061665) | 3061665..3062954 | + | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| JMV05_RS15610 (3062932) | 3062932..3063402 | + | 471 | WP_000680095.1 | kinase inhibitor | - |
| JMV05_RS15615 (3063717) | 3063717..3063800 | + | 84 | Protein_3053 | hypothetical protein | - |
| JMV05_RS15620 (3063956) | 3063956..3064957 | + | 1002 | WP_000549610.1 | acyltransferase | - |
| JMV05_RS15625 (3064991) | 3064991..3066451 | - | 1461 | WP_025759446.1 | endorhamnosidase | - |
| JMV05_RS15630 (3066618) | 3066618..3067831 | + | 1214 | WP_171763904.1 | IS3 family transposase IS629 | Transposase |
| JMV05_RS15635 (3067873) | 3067873..3068175 | - | 303 | Protein_3057 | phage head-binding domain-containing protein | - |
| JMV05_RS15640 (3068307) | 3068307..3070148 | - | 1842 | WP_005067134.1 | hypothetical protein | - |
| JMV05_RS15645 (3070148) | 3070148..3071554 | - | 1407 | WP_047563448.1 | phage DNA ejection protein | - |
| JMV05_RS15650 (3071564) | 3071564..3072142 | - | 579 | Protein_3060 | DNA transfer protein | - |
| JMV05_RS15655 (3072094) | 3072094..3073068 | - | 975 | Protein_3061 | IS3 family transposase IS629 | Transposase |
| JMV05_RS15660 (3073271) | 3073271..3073351 | + | 81 | Protein_3062 | hypothetical protein | - |
| JMV05_RS15665 (3073361) | 3073361..3073447 | - | 87 | Protein_3063 | transposase | - |
| JMV05_RS15670 (3073539) | 3073539..3075302 | + | 1764 | WP_000805588.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| JMV05_RS15675 (3075372) | 3075372..3075476 | - | 105 | Protein_3065 | tail fiber assembly protein | - |
| JMV05_RS15680 (3075482) | 3075482..3076105 | - | 624 | WP_225620331.1 | DUF4376 domain-containing protein | - |
| JMV05_RS15685 (3076056) | 3076056..3077470 | - | 1415 | Protein_3067 | prophage tail fiber N-terminal domain-containing protein | - |
| JMV05_RS15690 (3077534) | 3077534..3078133 | - | 600 | WP_152030413.1 | Attachment invasion locus protein | VF |
| JMV05_RS15695 (3078201) | 3078201..3081680 | - | 3480 | Protein_3069 | host specificity protein J | - |
| JMV05_RS15700 (3081741) | 3081741..3082282 | - | 542 | Protein_3070 | tail assembly protein | - |
| JMV05_RS15705 (3082279) | 3082279..3083022 | - | 744 | WP_000194737.1 | C40 family peptidase | - |
| JMV05_RS15710 (3083027) | 3083027..3083725 | - | 699 | WP_025758205.1 | phage minor tail protein L | - |
| JMV05_RS15715 (3083725) | 3083725..3084054 | - | 330 | WP_000447263.1 | phage tail protein | - |
| JMV05_RS15720 (3084054) | 3084054..3084762 | - | 709 | Protein_3074 | phage tail tape measure protein | - |
| JMV05_RS15730 (3086026) | 3086026..3086643 | + | 618 | WP_161550563.1 | DUF4376 domain-containing protein | - |
| JMV05_RS15735 (3086649) | 3086649..3086753 | + | 105 | Protein_3077 | tail fiber assembly protein | - |
| JMV05_RS15740 (3086823) | 3086823..3087806 | - | 984 | Protein_3078 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| JMV05_RS15745 (3087862) | 3087862..3088559 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| JMV05_RS15750 (3088941) | 3088941..3089936 | + | 996 | WP_119182165.1 | 6-phosphogluconolactonase | - |
| JMV05_RS15755 (3089977) | 3089977..3090930 | - | 954 | Protein_3081 | LysR family transcriptional regulator | - |
| JMV05_RS15765 (3091891) | 3091891..3092943 | + | 1053 | WP_025759641.1 | 4-oxalomesaconate tautomerase | - |
| JMV05_RS15770 (3093019) | 3093019..3094362 | + | 1344 | WP_152030431.1 | anion permease | - |
| JMV05_RS15775 (3094396) | 3094396..3095093 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| JMV05_RS15780 (3095110) | 3095110..3095277 | + | 168 | Protein_3086 | anion permease | - |
| JMV05_RS15785 (3095460) | 3095460..3097640 | + | 2181 | WP_000593939.1 | hydratase | - |
| JMV05_RS15790 (3097781) | 3097781..3099064 | - | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| JMV05_RS15795 (3099199) | 3099199..3100269 | - | 1071 | WP_025758499.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| JMV05_RS15800 (3100247) | 3100247..3100390 | - | 144 | WP_225620332.1 | excisionase | - |
| JMV05_RS15805 (3100452) | 3100452..3101620 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| JMV05_RS15810 (3101595) | 3101595..3101819 | - | 225 | WP_000034209.1 | ead/Ea22-like family protein | - |
| JMV05_RS15815 (3101816) | 3101816..3101971 | - | 156 | WP_032156998.1 | DUF2737 family protein | - |
| JMV05_RS15825 (3103297) | 3103297..3103965 | - | 669 | Protein_3095 | PBSX family phage terminase large subunit | - |
| JMV05_RS15830 (3103916) | 3103916..3104680 | - | 765 | WP_152030432.1 | hypothetical protein | - |
| JMV05_RS15835 (3104875) | 3104875..3105387 | + | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| JMV05_RS15840 (3105476) | 3105476..3105577 | - | 102 | Protein_3098 | lysis protein | - |
| JMV05_RS15850 (3105726) | 3105726..3106400 | + | 675 | WP_161550562.1 | IS66 family transposase ISSfl3 | Transposase |
| JMV05_RS15855 (3106397) | 3106397..3106743 | + | 347 | Protein_3100 | IS66 family insertion sequence element accessory protein TnpB | - |
| JMV05_RS15860 (3106763) | 3106763..3108151 | + | 1389 | Protein_3101 | IS66 family transposase ISSfl3 | Transposase |
| JMV05_RS15870 (3109462) | 3109462..3109677 | + | 216 | Protein_3103 | transposase domain-containing protein | - |
| JMV05_RS15875 (3109708) | 3109708..3110955 | - | 1248 | Protein_3104 | replicative DNA helicase | - |
| JMV05_RS15880 (3110952) | 3110952..3111830 | - | 879 | WP_000988187.1 | ATP-binding protein | - |
| JMV05_RS15885 (3111841) | 3111841..3112748 | - | 908 | Protein_3106 | DNA-binding protein | - |
| JMV05_RS15890 (3112735) | 3112735..3112968 | - | 234 | WP_000618004.1 | hypothetical protein | - |
| JMV05_RS15895 (3112965) | 3112965..3113933 | - | 969 | WP_000961310.1 | Rha family phage regulatory protein | - |
| JMV05_RS15900 (3113946) | 3113946..3114176 | + | 231 | WP_236743520.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JMV05_RS15905 (3114166) | 3114166..3114474 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| JMV05_RS15910 (3114516) | 3114516..3114692 | - | 177 | WP_001254220.1 | NinE family protein | - |
| JMV05_RS15915 (3114689) | 3114689..3115099 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| JMV05_RS15920 (3115096) | 3115096..3115374 | - | 279 | WP_025757756.1 | hypothetical protein | - |
| JMV05_RS15925 (3115449) | 3115449..3117797 | - | 2349 | Protein_3114 | toprim domain-containing protein | - |
| JMV05_RS15935 (3119101) | 3119101..3119519 | - | 419 | Protein_3116 | IS3 family transposase ISSfl10 | Transposase |
| JMV05_RS15940 (3119582) | 3119582..3120919 | + | 1338 | Protein_3117 | exodeoxyribonuclease VIII | - |
| JMV05_RS15945 (3120897) | 3120897..3121193 | + | 297 | WP_001277359.1 | host-nuclease inhibitor Gam family protein | - |
| JMV05_RS15950 (3121199) | 3121199..3122107 | + | 909 | WP_001173291.1 | AAA family ATPase | - |
| JMV05_RS24740 (3122659) | 3122659..3123372 | + | 714 | WP_050900360.1 | hypothetical protein ; Integrase | Integrase |
| JMV05_RS15965 (3123608) | 3123608..3124427 | + | 820 | Protein_3122 | bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase | - |
| JMV05_RS15970 (3124428) | 3124428..3125486 | - | 1059 | WP_000891695.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| JMV05_RS15975 (3125489) | 3125489..3126178 | - | 690 | WP_000604036.1 | molybdate ABC transporter permease subunit | - |
| JMV05_RS15980 (3126178) | 3126178..3126951 | - | 774 | WP_025757642.1 | molybdate ABC transporter substrate-binding protein | - |
| JMV05_RS15985 (3127118) | 3127118..3127267 | - | 150 | WP_000891515.1 | multidrug efflux pump accessory protein AcrZ | - |
| JMV05_RS15990 (3127376) | 3127376..3128073 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| JMV05_RS15995 (3128172) | 3128172..3128960 | + | 789 | WP_119182116.1 | molybdenum-dependent transcriptional regulator | - |
| JMV05_RS16000 (3129028) | 3129028..3130500 | + | 1473 | WP_000096896.1 | ABC transporter ATP-binding protein ModF | VF |
| JMV05_RS16005 (3130761) | 3130761..3131777 | + | 1017 | WP_001265430.1 | UDP-glucose 4-epimerase | VF |
| JMV05_RS16010 (3131787) | 3131787..3132833 | + | 1047 | WP_000191508.1 | galactose-1-phosphate uridylyltransferase | - |
| JMV05_RS16015 (3132837) | 3132837..3133985 | + | 1149 | WP_000053437.1 | galactokinase | - |
| JMV05_RS16020 (3133979) | 3133979..3135019 | + | 1041 | WP_000931412.1 | galactose-1-epimerase | - |
| JMV05_RS16025 (3135222) | 3135222..3135974 | + | 753 | WP_001295305.1 | 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | - |
| JMV05_RS16030 (3136141) | 3136141..3137193 | - | 1053 | WP_119182117.1 | 3-deoxy-7-phosphoheptulonate synthase AroG | - |
| JMV05_RS16035 (3137509) | 3137509..3137889 | + | 381 | WP_000784351.1 | YbgS-like family protein | - |
| JMV05_RS16040 (3138003) | 3138003..3138944 | + | 942 | WP_000951292.1 | CDF family zinc transporter ZitB | - |
| JMV05_RS16045 (3138941) | 3138941..3139660 | - | 720 | WP_000345410.1 | nicotinamide riboside transporter PnuC | - |
| JMV05_RS16050 (3139698) | 3139698..3140741 | - | 1044 | WP_000115306.1 | quinolinate synthase NadA | - |
| JMV05_RS16080 (3141726) | 3141726..3142517 | - | 792 | WP_119182060.1 | cell division protein CpoB | - |
| JMV05_RS16085 (3142527) | 3142527..3143048 | - | 522 | WP_124831353.1 | peptidoglycan-associated lipoprotein Pal | - |
| JMV05_RS16090 (3143083) | 3143083..3144375 | - | 1293 | WP_001295307.1 | Tol-Pal system beta propeller repeat protein TolB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|