MGE detailed information
MGE type: Genomic_island MGE length: 64992 bp
Accession: NZ_LR878365 Location: 2720273..2785264 Organism: Shigella flexneri 3a isolate 83 Replicon: chromosome
Accession: NZ_LR878365 Location: 2720273..2785264 Organism: Shigella flexneri 3a isolate 83 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV05_RS13835 (2716625) | 2716625..2717782 | + | 1158 | WP_001070350.1 | glucans biosynthesis protein MdoC | - |
| JMV05_RS13840 (2717790) | 2717790..2719271 | - | 1482 | Protein_2706 | cardiolipin synthase ClsC | - |
| JMV05_RS13845 (2719213) | 2719213..2719746 | - | 534 | WP_000857405.1 | O-acetyl-ADP-ribose deacetylase | - |
| JMV05_RS13850 (2719841) | 2719841..2720152 | - | 312 | Protein_2708 | type 1 fimbrial protein | - |
| JMV05_RS13855 (2720273) | 2720273..2720605 | - | 333 | WP_025759324.1 | Curli assembly protein CsgC | VF |
| JMV05_RS13860 (2720664) | 2720664..2721029 | - | 366 | WP_025759326.1 | Major curlin subunit | VF |
| JMV05_RS13870 (2722278) | 2722278..2722385 | - | 108 | Protein_2712 | hypothetical protein | VF |
| JMV05_RS13875 (2722426) | 2722426..2722881 | - | 456 | WP_000791650.1 | Minor curlin subunit | VF |
| JMV05_RS13880 (2723635) | 2723635..2724285 | + | 651 | WP_000481500.1 | CsgBAC operon transcriptional regulatory protein | VF |
| JMV05_RS13885 (2724290) | 2724290..2724679 | + | 390 | WP_000833288.1 | Curli production assembly/transport component CsgE | VF |
| JMV05_RS13890 (2724704) | 2724704..2724907 | + | 204 | Protein_2716 | Curli production assembly/transport component CsgF | VF |
| JMV05_RS13895 (2724963) | 2724963..2725660 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| JMV05_RS13900 (2725676) | 2725676..2725897 | + | 222 | Protein_2718 | curli assembly protein CsgF | - |
| JMV05_RS13905 (2725924) | 2725924..2726699 | + | 776 | Protein_2719 | Curli production assembly/transport component CsgG | VF |
| JMV05_RS13910 (2726763) | 2726763..2727254 | - | 492 | WP_001297187.1 | DUF1097 domain-containing protein | - |
| JMV05_RS13915 (2727356) | 2727356..2727910 | - | 555 | WP_001001917.1 | molecular chaperone YcdY | - |
| JMV05_RS13920 (2727934) | 2727934..2728671 | - | 738 | WP_000283664.1 | zinc-binding phosphatase | - |
| JMV05_RS13925 (2728726) | 2728726..2729664 | - | 939 | Protein_2723 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| JMV05_RS13935 (2730135) | 2730135..2730977 | - | 843 | WP_053884962.1 | DUF4942 domain-containing protein | - |
| JMV05_RS13940 (2731062) | 2731062..2731259 | - | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| JMV05_RS13945 (2731271) | 2731271..2731762 | - | 492 | WP_000976857.1 | DUF5983 family protein | - |
| JMV05_RS13950 (2731759) | 2731759..2732133 | - | 375 | WP_000854914.1 | TA system toxin CbtA family protein | Toxin Detail |
| JMV05_RS13955 (2732180) | 2732180..2732554 | - | 375 | WP_001280953.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| JMV05_RS13960 (2732717) | 2732717..2732938 | - | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| JMV05_RS13965 (2733001) | 2733001..2733477 | - | 477 | WP_001186738.1 | RadC family protein | - |
| JMV05_RS13970 (2733493) | 2733493..2733978 | - | 486 | WP_000214398.1 | antirestriction protein | - |
| JMV05_RS13975 (2734069) | 2734069..2734539 | - | 471 | Protein_2732 | DUF945 domain-containing protein | - |
| JMV05_RS13985 (2735849) | 2735849..2736290 | + | 442 | Protein_2734 | IS200-IS605 family transposase IS200G | Transposase |
| JMV05_RS13990 (2736408) | 2736408..2737346 | - | 939 | WP_052961806.1 | HTH-type transcriptional regulator YjiE | VF |
| JMV05_RS13995 (2737697) | 2737697..2738416 | + | 720 | WP_000677245.1 | amino acid racemase | - |
| JMV05_RS14000 (2738482) | 2738482..2739780 | + | 1299 | WP_000262203.1 | anaerobic C4-dicarboxylate transporter | - |
| JMV05_RS14005 (2740024) | 2740024..2741163 | - | 1140 | WP_071995536.1 | IS3 family transposase ISSd1 | Transposase |
| JMV05_RS14010 (2741344) | 2741344..2742288 | - | 945 | WP_001411475.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| JMV05_RS14015 (2742353) | 2742353..2743303 | - | 951 | WP_001300030.1 | virulence factor VirK | - |
| JMV05_RS14020 (2743308) | 2743308..2743796 | - | 489 | Protein_2741 | putative hexosyltransferase CapU | - |
| JMV05_RS14030 (2744599) | 2744599..2745437 | - | 839 | Protein_2743 | Streptomycin 3''-adenylyltransferase | ARG |
| JMV05_RS14035 (2745550) | 2745550..2746380 | - | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| JMV05_RS14040 (2746590) | 2746590..2747603 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| JMV05_RS14045 (2747806) | 2747806..2748156 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| JMV05_RS14050 (2748282) | 2748282..2748842 | + | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| JMV05_RS14055 (2748845) | 2748845..2751811 | + | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| JMV05_RS14060 (2751878) | 2751878..2752255 | + | 378 | WP_000656305.1 | GNAT family N-acetyltransferase | - |
| JMV05_RS14065 (2752456) | 2752456..2753115 | - | 660 | WP_000412211.1 | Chloramphenicol acetyltransferase | ARG |
| JMV05_RS14070 (2753394) | 2753394..2754091 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| JMV05_RS14075 (2754088) | 2754088..2754351 | + | 264 | WP_049802299.1 | antibiotic biosynthesis monooxygenase | - |
| JMV05_RS14080 (2754344) | 2754344..2754730 | + | 387 | WP_000460651.1 | hypothetical protein | - |
| JMV05_RS14085 (2754738) | 2754738..2755424 | + | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| JMV05_RS14090 (2755402) | 2755402..2756025 | - | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| JMV05_RS14095 (2756107) | 2756107..2757312 | + | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| JMV05_RS14100 (2757425) | 2757425..2758018 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| JMV05_RS14105 (2758106) | 2758106..2758522 | + | 417 | WP_000275180.1 | Transposon Tn10 TetD protein | VF |
| JMV05_RS14110 (2758532) | 2758532..2759695 | - | 1164 | Protein_2759 | IS4 family transposase IS10R | Transposase |
| JMV05_RS14120 (2760464) | 2760464..2761069 | - | 606 | Protein_2761 | putative hexosyltransferase CapU | - |
| JMV05_RS14125 (2761072) | 2761072..2761914 | - | 843 | WP_160371899.1 | polysaccharide deacetylase family protein | - |
| JMV05_RS14130 (2762100) | 2762100..2763296 | + | 1197 | Protein_2763 | IS3 family transposase | - |
| JMV05_RS14135 (2763379) | 2763379..2763636 | + | 258 | WP_000177057.1 | hypothetical protein | - |
| JMV05_RS14140 (2764194) | 2764194..2764961 | - | 768 | WP_000175457.1 | Fe(3+) dicitrate transport ATP-binding protein FecE | VF |
| JMV05_RS14145 (2764962) | 2764962..2765918 | - | 957 | WP_000684856.1 | Fe(3+) dicitrate transport system permease protein FecD | VF |
| JMV05_RS14150 (2765915) | 2765915..2766913 | - | 999 | WP_000125175.1 | Fe(3+) dicitrate transport system permease protein FecC | VF |
| JMV05_RS14155 (2766910) | 2766910..2767812 | - | 903 | WP_000879153.1 | Fe(3+) dicitrate ABC transporter substrate-binding protein FecB | - |
| JMV05_RS14160 (2767857) | 2767857..2770181 | - | 2325 | WP_000188248.1 | TonB-dependent Fe(3+) dicitrate receptor FecA | - |
| JMV05_RS14165 (2770268) | 2770268..2771221 | - | 954 | WP_001068910.1 | ferric citrate uptake sigma factor regulator FecR | - |
| JMV05_RS14170 (2771218) | 2771218..2771739 | - | 522 | WP_001283626.1 | putative RNA polymerase sigma factor FecI | VF |
| JMV05_RS14175 (2771876) | 2771876..2771944 | + | 69 | Protein_2772 | protein YkiE | - |
| JMV05_RS14180 (2772213) | 2772213..2772317 | + | 105 | Protein_2773 | IS3 family transposase | - |
| JMV05_RS14185 (2772657) | 2772657..2772914 | + | 258 | WP_000555341.1 | biofilm development regulator YmgB/AriR family protein | - |
| JMV05_RS14190 (2773039) | 2773039..2773169 | - | 131 | Protein_2775 | IS5/IS1182 family transposase | - |
| JMV05_RS14195 (2773244) | 2773244..2773983 | + | 740 | Protein_2776 | IS3 family transposase IS629 | Transposase |
| JMV05_RS14200 (2774656) | 2774656..2776164 | + | 1509 | WP_001189109.1 | group II intron reverse transcriptase/maturase | - |
| JMV05_RS14205 (2776248) | 2776248..2776727 | + | 480 | Protein_2778 | IS3 family transposase IS629 | Transposase |
| JMV05_RS14210 (2776767) | 2776767..2777108 | - | 342 | WP_000287886.1 | inovirus-type Gp2 protein | - |
| JMV05_RS14215 (2777136) | 2777136..2777698 | - | 563 | Protein_2780 | inovirus Gp2 family protein | - |
| JMV05_RS14220 (2777762) | 2777762..2778108 | - | 347 | Protein_2781 | DEAD/DEAH box helicase | - |
| JMV05_RS14225 (2778215) | 2778215..2778778 | - | 564 | WP_000282110.1 | inovirus-type Gp2 protein | - |
| JMV05_RS14230 (2780153) | 2780153..2781988 | - | 1836 | WP_001258873.1 | hypothetical protein | - |
| JMV05_RS14235 (2782089) | 2782089..2782376 | + | 288 | WP_000070931.1 | AlpA family transcriptional regulator | - |
| JMV05_RS14240 (2782348) | 2782348..2783877 | + | 1530 | WP_005067490.1 | DUF3987 domain-containing protein | - |
| JMV05_RS14245 (2784047) | 2784047..2785264 | - | 1218 | WP_000279879.1 | Prophage integrase IntA ; Integrase | Integrase |
| JMV05_RS14250 (2785631) | 2785631..2786617 | - | 987 | WP_000611845.1 | protein YcdU | - |
| JMV05_RS14255 (2786815) | 2786815..2787180 | + | 366 | WP_000124119.1 | hypothetical protein | - |
| JMV05_RS14260 (2787180) | 2787180..2788367 | + | 1188 | WP_161550641.1 | IS91 family transposase | - |
| JMV05_RS14265 (2788661) | 2788661..2789299 | - | 639 | WP_000191701.1 | HTH-type transcriptional regulator RutR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|