MGE detailed information
MGE type: Prophage MGE length: 78093 bp
Accession: NZ_LR878365 Location: 1622275..1700367 Organism: Shigella flexneri 3a isolate 83 Replicon: chromosome
Accession: NZ_LR878365 Location: 1622275..1700367 Organism: Shigella flexneri 3a isolate 83 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV05_RS07875 () | 1618629..1619090 | + | 462 | WP_005049020.1 | YehR family lipoprotein | - |
| JMV05_RS07880 () | 1619131..1619601 | - | 471 | WP_005063442.1 | DUF1456 family protein | - |
| JMV05_RS07885 () | 1619648..1620367 | - | 720 | WP_005048999.1 | two-component system response regulator BtsR | - |
| JMV05_RS07890 () | 1620364..1622049 | - | 1686 | WP_001295431.1 | two-component regulatory system sensor histidine kinase BtsS | - |
| JMV05_RS07895 () | 1622257..1623603 | + | 1347 | WP_000483772.1 | IS4 family transposase IS4 | Transposase |
| JMV05_RS07900 () | 1623708..1623773 | + | 66 | Protein_1546 | hypothetical protein | - |
| JMV05_RS07905 () | 1624001..1624249 | + | 249 | WP_001261936.1 | DinI-like family protein | - |
| JMV05_RS07910 () | 1624365..1624634 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| JMV05_RS07915 () | 1624691..1625359 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| JMV05_RS07920 () | 1625675..1627318 | + | 1644 | WP_032156999.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| JMV05_RS07925 () | 1627498..1628121 | - | 624 | WP_040234363.1 | DUF4376 domain-containing protein | - |
| JMV05_RS07930 () | 1628072..1628391 | - | 320 | Protein_1552 | phage tail protein | - |
| JMV05_RS07940 () | 1629230..1631179 | - | 1950 | WP_025759099.1 | phage tail tape measure protein | - |
| JMV05_RS07945 () | 1631264..1631600 | - | 337 | Protein_1555 | phage tail assembly protein | - |
| JMV05_RS07950 () | 1631600..1631956 | - | 357 | WP_001062338.1 | phage tail tube protein | - |
| JMV05_RS07955 () | 1631956..1633452 | - | 1497 | WP_000155744.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| JMV05_RS07960 () | 1633449..1633610 | - | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| JMV05_RS07965 () | 1633620..1634182 | - | 563 | Protein_1559 | hypothetical protein | - |
| JMV05_RS07970 () | 1634179..1634703 | - | 525 | WP_025759103.1 | hypothetical protein | - |
| JMV05_RS07975 () | 1634669..1635085 | - | 417 | WP_000702444.1 | phage head closure protein | - |
| JMV05_RS07980 () | 1635082..1635405 | - | 324 | WP_000924704.1 | head-tail connector protein | - |
| JMV05_RS07985 () | 1635450..1636553 | - | 1104 | Protein_1563 | phage major capsid protein | - |
| JMV05_RS07990 () | 1636554..1637180 | - | 627 | Protein_1564 | HK97 family phage prohead protease | - |
| JMV05_RS07995 () | 1637158..1638399 | - | 1242 | WP_000466011.1 | phage portal protein | - |
| JMV05_RS08000 () | 1638399..1638581 | - | 183 | WP_000478600.1 | hypothetical protein | - |
| JMV05_RS08005 () | 1638593..1640350 | - | 1758 | WP_040235539.1 | terminase large subunit | - |
| JMV05_RS08010 () | 1640350..1640832 | - | 483 | WP_024166447.1 | phage terminase small subunit P27 family | - |
| JMV05_RS08015 () | 1640980..1641330 | - | 351 | WP_001139556.1 | HNH endonuclease signature motif containing protein | - |
| JMV05_RS08020 () | 1641373..1641837 | - | 465 | WP_000092290.1 | lysis protein | - |
| JMV05_RS08025 () | 1641834..1642355 | - | 522 | Protein_1571 | lysozyme RrrD | - |
| JMV05_RS08030 () | 1642355..1643146 | - | 792 | Protein_1572 | IS66 family transposase ISSfl3 | Transposase |
| JMV05_RS08040 () | 1644411..1645223 | - | 813 | Protein_1574 | IS66 family transposase ISSfl3 | Transposase |
| JMV05_RS08045 () | 1645243..1645590 | - | 348 | WP_000631711.1 | IS66 family transposase ISSfl3 | Transposase |
| JMV05_RS08050 () | 1645587..1646261 | - | 675 | WP_001088287.1 | IS66 family transposase ISSfl3 | Transposase |
| JMV05_RS08055 () | 1646360..1646575 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| JMV05_RS08080 () | 1647371..1648086 | - | 716 | Protein_1578 | bacteriophage antitermination protein Q | - |
| JMV05_RS08085 () | 1648083..1648448 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JMV05_RS08090 () | 1648449..1649507 | - | 1059 | WP_025759819.1 | DUF968 domain-containing protein | - |
| JMV05_RS08095 () | 1649509..1649787 | - | 279 | WP_000929754.1 | hypothetical protein | - |
| JMV05_RS08100 () | 1649955..1650110 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 1650122..1650180 | + | 59 | - | - | Antitoxin Detail |
| JMV05_RS08105 () | 1650762..1651178 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| JMV05_RS08110 () | 1651249..1651946 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| JMV05_RS08115 () | 1651961..1652290 | + | 330 | Protein_1585 | 3'-5' exoribonuclease | - |
| JMV05_RS08120 () | 1652349..1652552 | + | 204 | WP_025759339.1 | DUF4224 domain-containing protein | - |
| JMV05_RS08125 () | 1652552..1653589 | + | 1038 | WP_004974968.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| JMV05_RS08135 () | 1653800..1654597 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| JMV05_RS08145 () | 1654935..1656197 | + | 1263 | WP_025759341.1 | Prophage integrase IntA ; Integrase | Integrase |
| JMV05_RS08155 () | 1657528..1658238 | + | 711 | Protein_1591 | MFS transporter | - |
| JMV05_RS08160 () | 1658340..1658480 | + | 141 | WP_171769178.1 | hypothetical protein | - |
| JMV05_RS08165 () | 1658522..1659750 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| JMV05_RS08170 () | 1659763..1660953 | + | 1191 | Protein_1594 | AMP nucleosidase | - |
| JMV05_RS08175 () | 1661009..1661706 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| JMV05_RS08180 () | 1661722..1661907 | + | 186 | Protein_1596 | AMP nucleosidase | - |
| JMV05_RS08185 () | 1662250..1662966 | + | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| JMV05_RS08195 () | 1663598..1665225 | - | 1628 | Protein_1598 | toxic metabolite efflux MATE transporter YeeO | - |
| JMV05_RS08205 () | 1665343..1666293 | - | 951 | WP_001010995.1 | HTH-type transcriptional regulator Cbl | - |
| JMV05_RS08210 () | 1666537..1667705 | + | 1169 | WP_000747040.1 | IS3 family transposase ISLad1 | Transposase |
| JMV05_RS08215 () | 1667680..1668564 | - | 885 | WP_119182152.1 | nitrogen assimilation transcriptional regulator NAC | - |
| JMV05_RS08225 () | 1669022..1669957 | - | 936 | WP_128861733.1 | L,D-transpeptidase | - |
| JMV05_RS08230 () | 1670019..1671098 | - | 1080 | WP_001165578.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| JMV05_RS08235 () | 1671110..1671853 | - | 744 | WP_025759701.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| JMV05_RS08240 () | 1671850..1672395 | - | 546 | WP_000973202.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| JMV05_RS08245 () | 1672547..1672720 | - | 174 | Protein_1606 | cobalamin biosynthesis protein | - |
| JMV05_RS08250 () | 1672699..1672887 | - | 189 | Protein_1607 | IS4 family transposase | - |
| JMV05_RS08255 () | 1673022..1673285 | - | 264 | Protein_1608 | integrase | - |
| JMV05_RS08260 () | 1673392..1674234 | - | 843 | WP_000711882.1 | DUF5677 domain-containing protein | - |
| JMV05_RS08265 () | 1674749..1675192 | + | 444 | WP_001069642.1 | hypothetical protein | - |
| JMV05_RS08270 () | 1675402..1676481 | + | 1080 | Protein_1611 | dynamin family protein | - |
| JMV05_RS08275 () | 1676627..1677783 | - | 1157 | Protein_1612 | IS3 family transposase ISSd1 | Transposase |
| JMV05_RS08280 () | 1677850..1678527 | + | 678 | Protein_1613 | IS3 family transposase ISSd1 | Transposase |
| JMV05_RS08285 () | 1678574..1679772 | + | 1199 | Protein_1614 | dGTPase | - |
| JMV05_RS08290 () | 1679769..1680674 | + | 906 | WP_021528432.1 | diguanylate cyclase regulator RdcB family protein | - |
| JMV05_RS08295 () | 1680671..1681741 | + | 1071 | WP_025759760.1 | hypothetical protein | VF |
| JMV05_RS08300 () | 1681877..1682554 | + | 678 | WP_005115548.1 | hypothetical protein | - |
| JMV05_RS08305 () | 1682570..1682689 | + | 120 | Protein_1618 | hypothetical protein | - |
| JMV05_RS08315 () | 1684111..1684440 | - | 330 | WP_000450409.1 | DUF496 family protein | - |
| JMV05_RS08320 () | 1684612..1684896 | - | 285 | Protein_1621 | hypothetical protein | - |
| JMV05_RS08325 () | 1684981..1685655 | + | 675 | Protein_1622 | IS66-like element accessory protein TnpA | - |
| JMV05_RS08330 () | 1685652..1685999 | + | 348 | WP_000631711.1 | IS66 family transposase ISSfl3 | Transposase |
| JMV05_RS08335 () | 1686019..1686798 | + | 780 | Protein_1624 | IS66 family transposase ISSfl3 | Transposase |
| JMV05_RS08340 () | 1686806..1687192 | - | 387 | Protein_1625 | IS3 family transposase ISLad1 | Transposase |
| JMV05_RS08345 () | 1687226..1688827 | - | 1602 | WP_004967149.1 | IS66 family transposase ISSfl3 | Transposase |
| JMV05_RS08350 () | 1688847..1689194 | - | 348 | WP_000631711.1 | IS66 family transposase ISSfl3 | Transposase |
| JMV05_RS08355 () | 1689191..1689865 | - | 675 | WP_024260664.1 | IS66 family transposase ISSfl3 | Transposase |
| JMV05_RS08360 () | 1689948..1690841 | - | 894 | Protein_1629 | hypothetical protein ; Integrase | Integrase |
| JMV05_RS08365 () | 1691022..1692250 | + | 1229 | WP_173020737.1 | IS3 family transposase IS2 | Transposase |
| JMV05_RS08370 () | 1692359..1693783 | + | 1425 | WP_000132549.1 | exodeoxyribonuclease I | - |
| JMV05_RS08375 () | 1693826..1694053 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| JMV05_RS08380 () | 1694067..1695065 | - | 999 | WP_032327136.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| JMV05_RS08385 () | 1695115..1695812 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| JMV05_RS08390 () | 1696080..1697438 | - | 1359 | WP_025758280.1 | putrescine/proton symporter PlaP | - |
| JMV05_RS08395 () | 1697441..1697491 | - | 51 | WP_236743516.1 | hypothetical protein | - |
| JMV05_RS08400 () | 1697706..1698635 | - | 930 | WP_000803325.1 | LysR substrate-binding domain-containing protein | - |
| JMV05_RS08405 () | 1698681..1699505 | - | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| JMV05_RS08410 () | 1699588..1699842 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| JMV05_RS08420 () | 1700595..1700867 | - | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| JMV05_RS08425 () | 1701150..1701200 | + | 51 | WP_001364200.1 | his operon leader peptide | - |
| JMV05_RS08430 () | 1701346..1702245 | + | 900 | WP_000131782.1 | ATP phosphoribosyltransferase | - |
| JMV05_RS08435 () | 1702251..1703555 | + | 1305 | WP_000009600.1 | histidinol dehydrogenase | - |
| JMV05_RS08440 () | 1703552..1704622 | + | 1071 | WP_000108917.1 | histidinol-phosphate transaminase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|