MGE detailed information
MGE type: Genomic_island MGE length: 26737 bp
Accession: NZ_LR778151 Location: 4383445..4410181 Organism: Escherichia coli isolate SC476 Replicon: chromosome
Accession: NZ_LR778151 Location: 4383445..4410181 Organism: Escherichia coli isolate SC476 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1C97_RS21025 () | 4378605..4378826 | + | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| H1C97_RS21030 () | 4378989..4379357 | + | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| H1C97_RS21035 () | 4379447..4379545 | + | 99 | Protein_4085 | toxin | - |
| H1C97_RS21040 () | 4380285..4381544 | + | 1260 | WP_000132327.1 | S-methyl-5-thioribose kinase | - |
| H1C97_RS21045 () | 4381554..4382669 | + | 1116 | WP_001022014.1 | S-methyl-5-thioribose-1-phosphate isomerase | - |
| H1C97_RS21050 () | 4382700..4383341 | + | 642 | WP_000439687.1 | L-fuculose-phosphate aldolase | - |
| H1C97_RS21055 () | 4383582..4384448 | + | 867 | WP_071587474.1 | multidrug DMT transporter permease | - |
| H1C97_RS21060 () | 4384489..4385475 | - | 987 | WP_000373366.1 | sugar-binding transcriptional regulator | - |
| H1C97_RS21065 () | 4385822..4387171 | - | 1350 | WP_001128363.1 | GntP family permease | - |
| H1C97_RS21070 () | 4387278..4389245 | - | 1968 | WP_000116326.1 | xylonate dehydratase YjhG | - |
| H1C97_RS21075 () | 4389256..4390161 | - | 906 | WP_001335841.1 | dihydrodipicolinate synthase family protein | - |
| H1C97_RS21080 () | 4390166..4390954 | - | 789 | WP_000251798.1 | IclR family transcriptional regulator | - |
| H1C97_RS21085 () | 4391257..4392039 | - | 783 | WP_000082780.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| H1C97_RS21090 () | 4392056..4392688 | - | 633 | WP_000600622.1 | ribulose-phosphate 3 epimerase family protein | - |
| H1C97_RS21095 () | 4392700..4393131 | - | 432 | WP_000606406.1 | PTS sugar transporter subunit IIA | - |
| H1C97_RS21100 () | 4393262..4394068 | - | 807 | WP_000118626.1 | BtpA family protein SgcQ | - |
| H1C97_RS21105 () | 4394081..4395394 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| H1C97_RS21110 () | 4395406..4395684 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| H1C97_RS21115 () | 4395681..4396802 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| H1C97_RS22700 () | 4397047..4397163 | - | 117 | Protein_4102 | VOC family protein | - |
| H1C97_RS21120 () | 4397201..4397419 | - | 219 | Protein_4103 | hypothetical protein | - |
| H1C97_RS21125 () | 4397588..4398334 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| H1C97_RS21130 () | 4398390..4398935 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| H1C97_RS21135 () | 4398947..4399204 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| H1C97_RS21140 () | 4399581..4399826 | - | 246 | Protein_4107 | GNAT family N-acetyltransferase | - |
| H1C97_RS21145 () | 4399942..4401182 | + | 1241 | Protein_4108 | DNA helicase | - |
| H1C97_RS21150 () | 4401765..4402745 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| H1C97_RS21155 () | 4402810..4403916 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| H1C97_RS21160 () | 4403936..4404652 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| H1C97_RS21165 () | 4406108..4406710 | + | 603 | WP_099716491.1 | ISKra4 family transposase ISCep1 | VF |
| H1C97_RS21170 () | 4407188..4407784 | + | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| H1C97_RS21175 () | 4408267..4408815 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| H1C97_RS21180 () | 4408880..4409419 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| H1C97_RS21185 () | 4409456..4410181 | + | 726 | WP_000066560.1 | Chaperone protein FimC | VF |
| H1C97_RS21190 () | 4410248..4412884 | + | 2637 | WP_053287292.1 | fimbrial usher FimD | - |
| H1C97_RS21195 () | 4412894..4413424 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| H1C97_RS21200 () | 4413437..4413940 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| H1C97_RS21205 () | 4413960..4414862 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|