MGE detailed information
MGE type: Prophage MGE length: 37954 bp
Accession: NZ_LR778147 Location: 2755817..2793770 Organism: Escherichia coli isolate SC418 Replicon: chromosome
Accession: NZ_LR778147 Location: 2755817..2793770 Organism: Escherichia coli isolate SC418 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1D11_RS13000 () | 2751080..2751820 | + | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| H1D11_RS13005 () | 2751855..2752376 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| H1D11_RS13010 () | 2752378..2752980 | - | 603 | WP_096984461.1 | YebB family permuted papain-like enzyme | - |
| H1D11_RS13015 () | 2753051..2753116 | + | 66 | WP_010723105.1 | stress response small protein YobI | - |
| H1D11_RS13020 () | 2753255..2753866 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| H1D11_RS13025 () | 2753875..2754885 | + | 1011 | WP_000568522.1 | Holliday junction branch migration DNA helicase RuvB | - |
| H1D11_RS13030 () | 2755035..2755820 | - | 786 | WP_000571471.1 | zinc ABC transporter permease subunit ZnuB | - |
| H1D11_RS13035 () | 2755817..2756572 | - | 756 | WP_000202996.1 | Zinc import ATP-binding protein ZnuC | VF |
| H1D11_RS13040 () | 2756651..2757583 | + | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| H1D11_RS13045 () | 2757599..2758921 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| H1D11_RS13050 () | 2759040..2760011 | + | 972 | WP_000448381.1 | Lipid A biosynthesis myristoyltransferase | VF |
| H1D11_RS13055 () | 2760143..2761585 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| H1D11_RS13060 () | 2761713..2762582 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| H1D11_RS13065 () | 2762920..2764395 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| H1D11_RS13070 () | 2764630..2766441 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| H1D11_RS13075 () | 2766478..2767119 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| H1D11_RS13080 () | 2767174..2768352 | - | 1179 | WP_048970280.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| H1D11_RS13085 () | 2768486..2768776 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| H1D11_RS13090 () | 2768843..2769199 | + | 357 | WP_001295500.1 | protein YebF | - |
| H1D11_RS13095 () | 2769526..2770185 | + | 660 | WP_000024733.1 | tellurite resistance TerB family protein | - |
| H1D11_RS13100 () | 2770349..2771518 | - | 1170 | WP_000942662.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| H1D11_RS13105 () | 2771575..2772000 | + | 426 | WP_000064873.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| H1D11_RS13110 () | 2772157..2774217 | + | 2061 | WP_115423283.1 | oligopeptidase B | - |
| H1D11_RS13115 () | 2774214..2774876 | - | 663 | WP_115423282.1 | exodeoxyribonuclease X | - |
| H1D11_RS13120 () | 2774900..2775556 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| H1D11_RS13125 () | 2775658..2775888 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H1D11_RS13130 () | 2776027..2776401 | + | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| H1D11_RS13135 () | 2776405..2777277 | + | 873 | WP_000879329.1 | copper homeostasis membrane protein CopD | - |
| H1D11_RS13140 () | 2777290..2777631 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - () | 2777659..2777930 | - | 272 | - | - | Antitoxin Detail |
| - () | 2777789..2777892 | + | 104 | - | - | Toxin Detail |
| H1D11_RS13145 () | 2778027..2778683 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| H1D11_RS13150 () | 2778684..2778875 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H1D11_RS13155 () | 2778980..2779216 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H1D11_RS13160 () | 2779334..2780773 | - | 1440 | WP_115423292.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H1D11_RS13165 () | 2780853..2783486 | - | 2634 | WP_115423281.1 | Intermembrane transport protein YebT | VF |
| H1D11_RS13170 () | 2783455..2784738 | - | 1284 | WP_001328843.1 | membrane integrity lipid transport subunit YebS | - |
| H1D11_RS13175 () | 2784868..2785365 | + | 498 | WP_001043884.1 | L-methionine (R)-S-oxide reductase | - |
| H1D11_RS13180 () | 2785462..2786160 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| H1D11_RS13185 () | 2786180..2788228 | + | 2049 | WP_001055796.1 | carboxy terminal-processing peptidase | - |
| H1D11_RS13190 () | 2788420..2789301 | + | 882 | WP_000984517.1 | protease HtpX | - |
| H1D11_RS13195 () | 2789347..2790720 | - | 1374 | WP_001314810.1 | MFS transporter | - |
| H1D11_RS13200 () | 2790897..2791688 | + | 792 | WP_001262182.1 | DNA-binding transcriptional regulator KdgR | - |
| H1D11_RS13205 () | 2791832..2792071 | - | 240 | WP_001211011.1 | hypothetical protein | - |
| H1D11_RS13210 () | 2792230..2792373 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| H1D11_RS13215 () | 2792448..2792735 | + | 288 | WP_001006855.1 | YebO family protein | - |
| H1D11_RS13220 () | 2793405..2793548 | + | 144 | WP_001295496.1 | YobF family protein | - |
| H1D11_RS13225 () | 2793561..2793770 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| H1D11_RS13230 () | 2793936..2794745 | + | 810 | WP_000010109.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| H1D11_RS13235 () | 2794742..2795308 | - | 567 | WP_001306762.1 | manganese efflux pump MntP | - |
| H1D11_RS13240 () | 2795737..2796195 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| H1D11_RS13245 () | 2796251..2797102 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| H1D11_RS13250 () | 2797115..2797915 | - | 801 | WP_000406928.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|