Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2777659..2777930 | Replicon | chromosome |
| Accession | NZ_LR778147 | ||
| Organism | Escherichia coli isolate SC418 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2777789..2777892 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2777659..2777930 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1D11_RS13115 | 2774214..2774876 | - | 663 | WP_115423282.1 | exodeoxyribonuclease X | - |
| H1D11_RS13120 | 2774900..2775556 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| H1D11_RS13125 | 2775658..2775888 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H1D11_RS13130 | 2776027..2776401 | + | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| H1D11_RS13135 | 2776405..2777277 | + | 873 | WP_000879329.1 | copper homeostasis membrane protein CopD | - |
| H1D11_RS13140 | 2777290..2777631 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2777659..2777930 | - | 272 | - | - | Antitoxin |
| - | 2777789..2777892 | + | 104 | - | - | Toxin |
| H1D11_RS13145 | 2778027..2778683 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| H1D11_RS13150 | 2778684..2778875 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H1D11_RS13155 | 2778980..2779216 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H1D11_RS13160 | 2779334..2780773 | - | 1440 | WP_115423292.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2755817..2793770 | 37953 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289197 NZ_LR778147:2777789-2777892 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289197 NZ_LR778147:c2777930-2777659 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
