MGE detailed information
MGE type: Prophage MGE length: 60881 bp
Accession: NZ_LR778143 Location: 3867583..3928463 Organism: Escherichia coli isolate SC422 Replicon: chromosome
Accession: NZ_LR778143 Location: 3867583..3928463 Organism: Escherichia coli isolate SC422 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1C98_RS18515 () | 3863482..3864702 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| H1C98_RS18520 () | 3864827..3865522 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| H1C98_RS18525 () | 3865475..3866767 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| H1C98_RS18530 () | 3866926..3867540 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| H1C98_RS18535 () | 3867583..3868437 | - | 855 | WP_000526492.1 | dimethyl sulfoxide reductase anchor subunit | - |
| H1C98_RS18540 () | 3868439..3869057 | - | 619 | Protein_3613 | dimethylsulfoxide reductase subunit B | - |
| H1C98_RS18545 () | 3869068..3871491 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| H1C98_RS18550 () | 3871552..3873978 | - | 2427 | WP_000041535.1 | dimethyl sulfoxide reductase subunit A | - |
| H1C98_RS18555 () | 3874177..3874482 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| H1C98_RS18560 () | 3874590..3875300 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| H1C98_RS18565 () | 3875303..3875863 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| H1C98_RS18570 () | 3875898..3876239 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| H1C98_RS18575 () | 3876374..3876700 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| H1C98_RS18580 () | 3876906..3878120 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| H1C98_RS18585 () | 3878132..3879151 | + | 1020 | WP_000836057.1 | Zn-dependent oxidoreductase | - |
| H1C98_RS18590 () | 3879209..3879319 | + | 111 | WP_021531328.1 | hypothetical protein | - |
| H1C98_RS18595 () | 3879339..3880619 | - | 1281 | WP_000876979.1 | Putative defective protein IntQ ; Integrase | Integrase |
| H1C98_RS18600 () | 3880654..3880905 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| H1C98_RS18605 () | 3880978..3883449 | - | 2472 | WP_001515375.1 | exonuclease | - |
| H1C98_RS18610 () | 3883543..3883734 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| H1C98_RS18615 () | 3883731..3883919 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| H1C98_RS18620 () | 3884487..3884705 | - | 219 | WP_001171952.1 | hypothetical protein | - |
| H1C98_RS18625 () | 3884865..3885020 | - | 156 | WP_000379588.1 | DUF1391 family protein | - |
| H1C98_RS18630 () | 3885189..3885596 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| H1C98_RS18635 () | 3885677..3885904 | + | 228 | WP_000921596.1 | transcriptional regulator | - |
| H1C98_RS18640 () | 3885888..3886409 | + | 522 | WP_000705355.1 | hypothetical protein | - |
| H1C98_RS18645 () | 3886390..3887355 | + | 966 | WP_000054514.1 | hypothetical protein | - |
| H1C98_RS18650 () | 3887396..3887818 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| H1C98_RS18655 () | 3887815..3888171 | + | 357 | WP_001315552.1 | class I SAM-dependent methyltransferase | - |
| H1C98_RS24105 () | 3888434..3888616 | + | 183 | Protein_3637 | hypothetical protein | - |
| H1C98_RS18660 () | 3888782..3889068 | + | 287 | Protein_3638 | hypothetical protein | - |
| H1C98_RS18665 () | 3889837..3891177 | + | 1341 | WP_000589013.1 | ISNCY family transposase ISCARN112 | Transposase |
| H1C98_RS18670 () | 3891614..3891946 | - | 333 | WP_001349760.1 | FlxA-like family protein | - |
| H1C98_RS18675 () | 3892149..3892454 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| H1C98_RS18680 () | 3892479..3892718 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| H1C98_RS18685 () | 3892718..3893005 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| H1C98_RS18690 () | 3893077..3893232 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| H1C98_RS18695 () | 3893449..3893700 | + | 252 | WP_000980999.1 | hypothetical protein | - |
| H1C98_RS18700 () | 3893767..3894045 | + | 279 | WP_023140913.1 | hypothetical protein | - |
| H1C98_RS18705 () | 3894047..3895096 | + | 1050 | WP_001265196.1 | DUF968 domain-containing protein | - |
| H1C98_RS18710 () | 3895110..3895862 | + | 753 | WP_001047131.1 | antitermination protein | - |
| H1C98_RS18715 () | 3896037..3896239 | - | 203 | Protein_3649 | cold shock-like protein CspF | - |
| H1C98_RS18720 () | 3896538..3896753 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| H1C98_RS18725 () | 3897507..3897722 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| H1C98_RS18730 () | 3897727..3898037 | + | 311 | Protein_3652 | DUF1327 domain-containing protein | - |
| H1C98_RS18735 () | 3898034..3898567 | + | 534 | WP_001092971.1 | lysozyme | - |
| H1C98_RS18740 () | 3898564..3899061 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| H1C98_RS18745 () | 3899424..3899636 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| H1C98_RS18750 () | 3899647..3899835 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| H1C98_RS18755 () | 3899838..3899903 | + | 66 | WP_122985912.1 | hypothetical protein | - |
| H1C98_RS18760 () | 3899983..3900138 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| H1C98_RS18765 () | 3900310..3900483 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| H1C98_RS18770 () | 3900635..3901045 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| H1C98_RS18775 () | 3901103..3901336 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| H1C98_RS18780 () | 3901725..3902270 | + | 546 | WP_000453603.1 | DNA-packaging protein | - |
| H1C98_RS18785 () | 3902245..3904170 | + | 1926 | WP_001549229.1 | phage terminase large subunit family protein | - |
| H1C98_RS18790 () | 3904167..3904373 | + | 207 | WP_000198149.1 | gpW family protein | - |
| H1C98_RS18795 () | 3904370..3905971 | + | 1602 | WP_001324962.1 | phage portal protein | - |
| H1C98_RS18800 () | 3905952..3907271 | + | 1320 | WP_000123333.1 | S49 family peptidase | - |
| H1C98_RS18805 () | 3907281..3907613 | + | 333 | WP_001549228.1 | head decoration protein | - |
| H1C98_RS18810 () | 3907669..3908694 | + | 1026 | WP_001557937.1 | major capsid protein | - |
| H1C98_RS18815 () | 3908734..3909129 | + | 396 | WP_180344590.1 | DNA-packaging protein FI | - |
| H1C98_RS18820 () | 3909141..3909494 | + | 354 | WP_000785282.1 | head-tail joining protein | - |
| H1C98_RS18825 () | 3909506..3910084 | + | 579 | WP_000975081.1 | phage tail protein | - |
| H1C98_RS18830 () | 3910081..3910475 | + | 395 | Protein_3672 | phage tail protein | - |
| H1C98_RS18835 () | 3910483..3911223 | + | 741 | WP_001406215.1 | phage tail protein | - |
| H1C98_RS18840 () | 3911239..3911661 | + | 423 | WP_000479138.1 | phage minor tail protein G | - |
| H1C98_RS18845 () | 3911643..3912077 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| H1C98_RS18850 () | 3912070..3914649 | + | 2580 | WP_000840345.1 | phage tail tape measure protein | - |
| H1C98_RS18855 () | 3914646..3914975 | + | 330 | WP_000847345.1 | phage tail protein | - |
| H1C98_RS18860 () | 3914975..3915673 | + | 699 | WP_001152580.1 | phage minor tail protein L | - |
| H1C98_RS18865 () | 3915679..3916422 | + | 744 | WP_000140764.1 | C40 family peptidase | - |
| H1C98_RS18870 () | 3916359..3916961 | + | 603 | WP_000090905.1 | tail assembly protein | - |
| H1C98_RS18875 () | 3917022..3920501 | + | 3480 | WP_000515751.1 | host specificity protein J | - |
| H1C98_RS18880 () | 3920569..3921168 | + | 600 | WP_063101942.1 | Outer membrane protein X | VF |
| H1C98_RS18885 () | 3921233..3924583 | + | 3351 | WP_074147718.1 | prophage tail fiber N-terminal domain-containing protein | - |
| H1C98_RS18890 () | 3924583..3925158 | + | 576 | WP_000885610.1 | tail fiber assembly protein | - |
| H1C98_RS18895 () | 3925256..3925846 | - | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| H1C98_RS18900 () | 3926163..3926396 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| H1C98_RS18905 () | 3926465..3926578 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| H1C98_RS18910 () | 3927098..3928463 | + | 1366 | Protein_3688 | MHS family MFS transporter | - |
| H1C98_RS18915 () | 3928552..3930012 | + | 1461 | WP_000527751.1 | mannitol dehydrogenase family protein | - |
| H1C98_RS18920 () | 3930048..3930251 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| H1C98_RS18925 () | 3930464..3931150 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| H1C98_RS18930 () | 3931239..3931985 | - | 747 | WP_000636575.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|