MGE detailed information
MGE type: Prophage MGE length: 60884 bp
Accession: NZ_LR778140 Location: 2387784..2448667 Organism: Escherichia coli isolate SC406 Replicon: chromosome
Accession: NZ_LR778140 Location: 2387784..2448667 Organism: Escherichia coli isolate SC406 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1C94_RS11330 () | 2383683..2384903 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| H1C94_RS11335 () | 2385028..2385723 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| H1C94_RS11340 () | 2385676..2386968 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| H1C94_RS11345 () | 2387127..2387741 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| H1C94_RS11350 () | 2387784..2388638 | - | 855 | WP_000526492.1 | dimethyl sulfoxide reductase anchor subunit | - |
| H1C94_RS11355 () | 2388640..2389257 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| H1C94_RS11360 () | 2389268..2391691 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| H1C94_RS11365 () | 2391752..2394178 | - | 2427 | WP_000041535.1 | dimethyl sulfoxide reductase subunit A | - |
| H1C94_RS11370 () | 2394377..2394682 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| H1C94_RS11375 () | 2394790..2395500 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| H1C94_RS11380 () | 2395503..2396063 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| H1C94_RS11385 () | 2396098..2396439 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| H1C94_RS11390 () | 2396574..2396900 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| H1C94_RS11395 () | 2397106..2398320 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| H1C94_RS11400 () | 2398332..2399351 | + | 1020 | WP_000836057.1 | Zn-dependent oxidoreductase | - |
| H1C94_RS11405 () | 2399409..2399519 | + | 111 | WP_021531328.1 | hypothetical protein | - |
| H1C94_RS11410 () | 2399539..2400819 | - | 1281 | WP_000876979.1 | Putative defective protein IntQ ; Integrase | Integrase |
| H1C94_RS11415 () | 2400854..2401105 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| H1C94_RS11420 () | 2401178..2403649 | - | 2472 | WP_001515375.1 | exonuclease | - |
| H1C94_RS11425 () | 2403743..2403934 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| H1C94_RS11430 () | 2403931..2404119 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| H1C94_RS11435 () | 2404687..2404905 | - | 219 | WP_001171952.1 | hypothetical protein | - |
| H1C94_RS11440 () | 2405065..2405220 | - | 156 | WP_000379588.1 | DUF1391 family protein | - |
| H1C94_RS11445 () | 2405389..2405796 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| H1C94_RS11450 () | 2405877..2406104 | + | 228 | WP_000921596.1 | transcriptional regulator | - |
| H1C94_RS11455 () | 2406088..2406609 | + | 522 | WP_000705355.1 | hypothetical protein | - |
| H1C94_RS11460 () | 2406590..2407555 | + | 966 | WP_000054514.1 | hypothetical protein | - |
| H1C94_RS11465 () | 2407596..2408018 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| H1C94_RS11470 () | 2408015..2408372 | + | 358 | Protein_2239 | class I SAM-dependent methyltransferase | - |
| H1C94_RS23755 () | 2408635..2408817 | + | 183 | Protein_2240 | hypothetical protein | - |
| H1C94_RS11475 () | 2408983..2409269 | + | 287 | Protein_2241 | hypothetical protein | - |
| H1C94_RS11480 () | 2410038..2411378 | + | 1341 | WP_000589013.1 | ISNCY family transposase ISCARN112 | Transposase |
| H1C94_RS11485 () | 2411815..2412147 | - | 333 | WP_001349760.1 | FlxA-like family protein | - |
| H1C94_RS11490 () | 2412350..2412655 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| H1C94_RS11495 () | 2412680..2412919 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| H1C94_RS11500 () | 2412919..2413206 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| H1C94_RS11505 () | 2413278..2413433 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| H1C94_RS11510 () | 2413650..2413901 | + | 252 | WP_000980999.1 | hypothetical protein | - |
| H1C94_RS11515 () | 2413968..2414246 | + | 279 | WP_023140913.1 | hypothetical protein | - |
| H1C94_RS11520 () | 2414248..2415297 | + | 1050 | WP_001265196.1 | DUF968 domain-containing protein | - |
| H1C94_RS11525 () | 2415311..2416063 | + | 753 | WP_001047131.1 | antitermination protein | - |
| H1C94_RS11530 () | 2416238..2416440 | - | 203 | Protein_2252 | cold shock-like protein CspF | - |
| H1C94_RS11535 () | 2416739..2416954 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| H1C94_RS11540 () | 2417708..2417923 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| H1C94_RS11545 () | 2417928..2418238 | + | 311 | Protein_2255 | DUF1327 domain-containing protein | - |
| H1C94_RS11550 () | 2418235..2418768 | + | 534 | WP_001092971.1 | lysozyme | - |
| H1C94_RS11555 () | 2418765..2419262 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| H1C94_RS11560 () | 2419625..2419837 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| H1C94_RS11565 () | 2419848..2420036 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| H1C94_RS11570 () | 2420039..2420104 | + | 66 | WP_122985912.1 | hypothetical protein | - |
| H1C94_RS11575 () | 2420184..2420339 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| H1C94_RS11580 () | 2420511..2420684 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| H1C94_RS11585 () | 2420836..2421246 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| H1C94_RS11590 () | 2421304..2421537 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| H1C94_RS11595 () | 2421926..2422471 | + | 546 | WP_000453603.1 | DNA-packaging protein | - |
| H1C94_RS11600 () | 2422446..2424371 | + | 1926 | WP_001549229.1 | phage terminase large subunit family protein | - |
| H1C94_RS11605 () | 2424368..2424574 | + | 207 | WP_000198149.1 | gpW family protein | - |
| H1C94_RS11610 () | 2424571..2426172 | + | 1602 | WP_001324962.1 | phage portal protein | - |
| H1C94_RS11615 () | 2426153..2427472 | + | 1320 | WP_000123333.1 | S49 family peptidase | - |
| H1C94_RS11620 () | 2427482..2427814 | + | 333 | WP_001549228.1 | head decoration protein | - |
| H1C94_RS11625 () | 2427870..2428895 | + | 1026 | WP_000063224.1 | major capsid protein | - |
| H1C94_RS11630 () | 2428937..2429332 | + | 396 | WP_000158880.1 | DNA-packaging protein FI | - |
| H1C94_RS11635 () | 2429344..2429697 | + | 354 | WP_000785282.1 | head-tail joining protein | - |
| H1C94_RS11640 () | 2429709..2430287 | + | 579 | WP_000975081.1 | phage tail protein | - |
| H1C94_RS11645 () | 2430284..2430679 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| H1C94_RS11650 () | 2430687..2431427 | + | 741 | WP_001406215.1 | phage tail protein | - |
| H1C94_RS11655 () | 2431443..2431865 | + | 423 | WP_000479138.1 | phage minor tail protein G | - |
| H1C94_RS11660 () | 2431847..2432281 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| H1C94_RS11665 () | 2432274..2434853 | + | 2580 | WP_000840345.1 | phage tail tape measure protein | - |
| H1C94_RS11670 () | 2434850..2435179 | + | 330 | WP_000847345.1 | phage tail protein | - |
| H1C94_RS11675 () | 2435179..2435877 | + | 699 | WP_001152580.1 | phage minor tail protein L | - |
| H1C94_RS11680 () | 2435883..2436626 | + | 744 | WP_000140764.1 | C40 family peptidase | - |
| H1C94_RS11685 () | 2436563..2437165 | + | 603 | WP_000090905.1 | tail assembly protein | - |
| H1C94_RS11690 () | 2437226..2440705 | + | 3480 | WP_000515751.1 | host specificity protein J | - |
| H1C94_RS11695 () | 2440773..2441372 | + | 600 | WP_063101942.1 | Outer membrane protein X | VF |
| H1C94_RS11700 () | 2441437..2444787 | + | 3351 | WP_074147718.1 | prophage tail fiber N-terminal domain-containing protein | - |
| H1C94_RS11705 () | 2444787..2445362 | + | 576 | WP_000885610.1 | tail fiber assembly protein | - |
| H1C94_RS11710 () | 2445460..2446050 | - | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| H1C94_RS11715 () | 2446367..2446600 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| H1C94_RS11720 () | 2446669..2446782 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| H1C94_RS11725 () | 2447302..2448667 | + | 1366 | Protein_2291 | MHS family MFS transporter | - |
| H1C94_RS11730 () | 2448756..2450216 | + | 1461 | WP_000527751.1 | mannitol dehydrogenase family protein | - |
| H1C94_RS11735 () | 2450252..2450455 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| H1C94_RS11740 () | 2450668..2451354 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| H1C94_RS11745 () | 2451443..2452189 | - | 747 | WP_000636575.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|