MGE detailed information
MGE type: Genomic_island MGE length: 20681 bp
Accession: NZ_LR740758 Location: 264495..285175 Organism: Escherichia coli strain BEN5202 isolate laying hen 51 weeks old Replicon: chromosome
Accession: NZ_LR740758 Location: 264495..285175 Organism: Escherichia coli strain BEN5202 isolate laying hen 51 weeks old Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APEC5202_RS01180 () | 260610..261035 | - | 426 | WP_000946068.1 | type VI secretion system baseplate subunit TssE | - |
| APEC5202_RS01185 () | 261040..262524 | - | 1485 | WP_000111582.1 | type VI secretion system contractile sheath large subunit | - |
| APEC5202_RS01190 () | 262547..263050 | - | 504 | WP_103529990.1 | type VI secretion system contractile sheath small subunit | - |
| APEC5202_RS01195 () | 263756..264274 | + | 519 | WP_001142963.1 | Hcp family type VI secretion system effector | - |
| APEC5202_RS01200 () | 264495..266476 | + | 1982 | Protein_235 | Actin cross-linking toxin VgrG1 | VF |
| APEC5202_RS01205 () | 266583..267629 | + | 1047 | WP_000571853.1 | DUF2169 domain-containing protein | - |
| APEC5202_RS01210 () | 267622..269061 | + | 1440 | WP_000528852.1 | DUF4150 domain-containing protein | - |
| APEC5202_RS01215 () | 269036..269326 | + | 291 | WP_000513317.1 | hypothetical protein | - |
| APEC5202_RS01220 () | 269584..270348 | + | 765 | Protein_239 | ISAs1 family transposase ISEc1 | Transposase |
| APEC5202_RS01225 () | 270577..271080 | + | 504 | Protein_240 | hypothetical protein | - |
| APEC5202_RS01230 () | 271174..271662 | + | 489 | WP_001298174.1 | integrating conjugative element protein | - |
| APEC5202_RS01235 () | 271688..271882 | + | 195 | Protein_242 | transposase | - |
| APEC5202_RS01240 () | 271933..272703 | - | 771 | WP_001118042.1 | 2-oxoglutaramate amidase | - |
| APEC5202_RS01245 () | 272884..273330 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| APEC5202_RS01250 () | 273373..275817 | - | 2445 | WP_000973137.1 | Acyl-coenzyme A dehydrogenase | VF |
| APEC5202_RS01255 () | 276057..276635 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| APEC5202_RS01260 () | 276840..277607 | + | 768 | WP_001331866.1 | class II glutamine amidotransferase | - |
| APEC5202_RS01265 () | 277578..278318 | - | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| APEC5202_RS01270 () | 278630..279379 | + | 750 | WP_000093934.1 | hypothetical protein | VF |
| APEC5202_RS01275 () | 279555..280052 | + | 498 | WP_000006241.1 | REP-associated tyrosine transposase RayT | - |
| APEC5202_RS01280 () | 280135..280293 | - | 159 | WP_014639450.1 | hypothetical protein | - |
| APEC5202_RS01285 () | 280372..282084 | - | 1713 | Protein_252 | Flagellar biosynthesis protein FlhA | VF |
| APEC5202_RS01290 () | 282056..282841 | + | 786 | WP_000207544.1 | hypothetical protein | VF |
| APEC5202_RS01295 () | 282912..283967 | + | 1056 | WP_001226168.1 | DNA polymerase IV | - |
| APEC5202_RS01300 () | 284019..284312 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| APEC5202_RS01305 () | 284315..284713 | + | 399 | WP_001263500.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| APEC5202_RS01310 () | 284723..285175 | + | 453 | WP_001059895.1 | GNAT family N-acetyltransferase | - |
| APEC5202_RS01315 () | 285365..286504 | + | 1140 | WP_000521577.1 | RNA ligase RtcB family protein | - |
| APEC5202_RS01320 () | 286501..287115 | + | 615 | WP_000602123.1 | peptide chain release factor H | - |
| APEC5202_RS01325 () | 287172..288629 | - | 1458 | WP_001292999.1 | cytosol nonspecific dipeptidase | - |
| APEC5202_RS01330 () | 288890..289348 | + | 459 | WP_001291988.1 | xanthine phosphoribosyltransferase | - |
| - () | 289944..290024 | + | 81 | NuclAT_4 | - | - |
| - () | 289944..290024 | + | 81 | NuclAT_4 | - | - |
| - () | 289944..290024 | + | 81 | NuclAT_4 | - | - |
| - () | 289944..290024 | + | 81 | NuclAT_4 | - | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|