MGE detailed information
MGE type: Conjugative plasmid MGE length: 150934 bp
Accession: NZ_LR723673 Location: 1..150934 Organism: Rhizobium flavum strain YW14 Replicon: plasmid 4
Accession: NZ_LR723673 Location: 1..150934 Organism: Rhizobium flavum strain YW14 Replicon: plasmid 4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFD27_RS21805 () | 273..1931 | + | 1659 | WP_077548353.1 | GMC family oxidoreductase N-terminal domain-containing protein | - |
| GFD27_RS21810 () | 2017..3399 | + | 1383 | WP_036588664.1 | glutathione-disulfide reductase | - |
| GFD27_RS21815 () | 3574..3849 | - | 276 | Protein_3 | IS256 family transposase ISCce2 | Transposase |
| GFD27_RS21820 () | 3882..4711 | - | 830 | Protein_4 | IS256 family transposase ISCce2 | Transposase |
| GFD27_RS21825 () | 4713..4882 | - | 170 | Protein_5 | DNA polymerase III subunit alpha | - |
| GFD27_RS21830 () | 4881..5062 | + | 182 | Protein_6 | transposase | - |
| GFD27_RS21840 () | 5880..7532 | + | 1653 | WP_036588668.1 | FAD-binding oxidoreductase | - |
| GFD27_RS21845 () | 7546..8235 | + | 690 | WP_036588669.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| GFD27_RS21850 () | 8420..9363 | + | 944 | WP_172977944.1 | IS630 family transposase ISRm10-1 | Transposase |
| GFD27_RS21855 () | 9553..11118 | + | 1566 | WP_077548354.1 | acyl--CoA ligase | - |
| GFD27_RS21860 () | 11182..12618 | + | 1437 | WP_077548355.1 | aldehyde dehydrogenase family protein | - |
| GFD27_RS21865 () | 12831..13145 | - | 315 | Protein_12 | ISL3 family transposase ISRsp8 | Transposase |
| GFD27_RS21870 () | 13252..13617 | - | 366 | WP_077548356.1 | WGR domain-containing protein | - |
| GFD27_RS21875 () | 14000..14485 | - | 486 | WP_036588671.1 | helix-turn-helix domain-containing protein | - |
| GFD27_RS21880 () | 14724..15115 | - | 392 | Protein_15 | hypothetical protein | - |
| GFD27_RS21885 () | 15119..15316 | - | 198 | WP_003537140.1 | hypothetical protein | - |
| GFD27_RS21890 () | 15549..16262 | - | 714 | WP_077548608.1 | ParA family protein | - |
| GFD27_RS21895 () | 16944..17345 | + | 402 | WP_077548358.1 | hypothetical protein | Relaxase |
| GFD27_RS21900 () | 17349..20264 | + | 2916 | WP_077548359.1 | conjugal transfer protein TraA | - |
| GFD27_RS21905 () | 20271..20480 | + | 210 | WP_077548360.1 | hypothetical protein | - |
| GFD27_RS21910 () | 20960..23935 | + | 2976 | WP_152338517.1 | Tn3 family transposase TnpA_ISAzs17 | Transposase |
| GFD27_RS21915 () | 24015..24695 | + | 681 | WP_152338518.1 | hypothetical protein | - |
| GFD27_RS21920 () | 24692..26212 | + | 1521 | WP_077548365.1 | AMP-binding protein | - |
| GFD27_RS21925 () | 26606..27802 | + | 1197 | WP_152338409.1 | IS256 family transposase ISAli6 | Transposase |
| GFD27_RS21930 () | 28039..28272 | - | 234 | WP_139346112.1 | hypothetical protein | - |
| GFD27_RS21935 () | 28454..28909 | - | 456 | WP_139346111.1 | hypothetical protein | - |
| GFD27_RS21940 () | 29059..29632 | - | 574 | Protein_27 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| GFD27_RS21945 () | 29781..30194 | + | 414 | Protein_28 | Tn3 family transposase TnpA_ISSod9 | Transposase |
| GFD27_RS21950 () | 30194..30574 | + | 381 | Protein_29 | IS21 family transposase ISRel5 | Transposase |
| GFD27_RS21955 () | 30580..31704 | - | 1125 | WP_077546346.1 | IS110 family transposase ISMex12 | Transposase |
| GFD27_RS21960 () | 31768..32964 | - | 1197 | WP_152338409.1 | IS256 family transposase ISAli6 | Transposase |
| GFD27_RS21965 () | 33115..33303 | - | 189 | Protein_32 | IS110 family transposase ISMex12 | Transposase |
| GFD27_RS21970 () | 33447..33782 | + | 336 | Protein_33 | IS3 family transposase ISNha4 | Transposase |
| GFD27_RS21975 () | 33801..34727 | - | 927 | WP_172977945.1 | GGDEF domain-containing protein | - |
| GFD27_RS21980 () | 35328..36011 | + | 684 | WP_077549895.1 | CerR family C-terminal domain-containing protein | - |
| GFD27_RS21985 () | 36118..36438 | + | 321 | WP_077549896.1 | hypothetical protein | - |
| GFD27_RS21990 () | 36898..37206 | + | 309 | WP_139346391.1 | hypothetical protein | - |
| GFD27_RS21995 () | 37305..38921 | + | 1617 | WP_077549898.1 | AarF/ABC1/UbiB kinase family protein | - |
| GFD27_RS22000 () | 38874..39317 | - | 444 | WP_172977946.1 | Hsp20 family protein | - |
| GFD27_RS22005 () | 39873..40934 | - | 1062 | WP_077549904.1 | alpha/beta fold hydrolase | - |
| GFD27_RS22010 () | 41178..41996 | - | 819 | WP_152338519.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| GFD27_RS22015 () | 41993..42979 | - | 987 | WP_077549901.1 | aldo/keto reductase | - |
| GFD27_RS22020 () | 43293..43469 | + | 177 | WP_139346392.1 | DUF2934 domain-containing protein | - |
| GFD27_RS22025 () | 44189..44773 | - | 585 | WP_077549903.1 | acyloxyacyl hydrolase | - |
| GFD27_RS22030 () | 44881..45191 | + | 311 | Protein_45 | transposase | - |
| GFD27_RS22035 () | 45449..45929 | + | 481 | Protein_46 | transposase | - |
| GFD27_RS22040 () | 46263..46493 | - | 231 | Protein_47 | IS110 family transposase ISMdi12 | Transposase |
| GFD27_RS22045 () | 46577..47956 | + | 1380 | Protein_48 | ISKra4 family transposase ISMet1 | Transposase |
| GFD27_RS22050 () | 48447..49373 | + | 927 | WP_077548973.1 | DUF1738 domain-containing protein | - |
| GFD27_RS22055 () | 49519..49761 | + | 243 | WP_077548975.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| GFD27_RS22060 () | 49761..50165 | + | 405 | WP_077548976.1 | type II toxin-antitoxin system VapC family toxin | - |
| GFD27_RS22065 () | 50522..50668 | + | 147 | WP_172977947.1 | hypothetical protein | - |
| GFD27_RS22070 () | 50966..51283 | + | 318 | WP_064334949.1 | DUF736 domain-containing protein | - |
| GFD27_RS22075 () | 51602..51772 | + | 171 | WP_172977948.1 | hypothetical protein | - |
| GFD27_RS22080 () | 51811..52089 | - | 279 | WP_077548978.1 | HU family DNA-binding protein | - |
| GFD27_RS22085 () | 52230..52487 | - | 258 | WP_077549026.1 | WGR domain-containing protein | - |
| GFD27_RS22090 () | 52737..54659 | - | 1923 | WP_077548979.1 | hypothetical protein | VF |
| GFD27_RS22095 () | 54652..54867 | - | 216 | WP_077548980.1 | type IV conjugative transfer system coupling protein TraD | - |
| GFD27_RS22100 () | 54872..55168 | - | 297 | WP_003501352.1 | TraC family protein | - |
| GFD27_RS22105 () | 55417..58719 | + | 3303 | WP_077548981.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| GFD27_RS22110 () | 58716..59246 | + | 531 | WP_003501349.1 | conjugative transfer signal peptidase TraF | - |
| GFD27_RS22115 () | 59167..60414 | + | 1248 | WP_077548982.1 | conjugal transfer protein TraB | - |
| GFD27_RS22120 () | 60428..61057 | + | 630 | WP_077548983.1 | conjugal transfer protein TraH | - |
| GFD27_RS22125 () | 61378..61686 | + | 309 | WP_077548984.1 | transcriptional repressor TraM | - |
| GFD27_RS22130 () | 61690..62394 | - | 705 | WP_077548985.1 | transcriptional regulator TraR | - |
| GFD27_RS22135 () | 62556..63752 | + | 1197 | WP_152338409.1 | IS256 family transposase ISAli6 | Transposase |
| GFD27_RS22140 () | 64131..64868 | + | 738 | WP_077546249.1 | hypothetical protein | - |
| GFD27_RS22145 () | 64874..66295 | - | 1422 | WP_077546248.1 | ISNCY family transposase ISRel10 | Transposase |
| GFD27_RS22150 () | 66580..67374 | - | 795 | WP_003501340.1 | 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG | - |
| GFD27_RS22155 () | 67440..69128 | - | 1689 | WP_003501337.1 | electron transfer flavoprotein-ubiquinone oxidoreductase | - |
| GFD27_RS22160 () | 69134..70063 | - | 930 | WP_003501335.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| GFD27_RS22165 () | 70089..70838 | - | 750 | WP_003501333.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| GFD27_RS22170 () | 70893..71879 | - | 987 | WP_035243673.1 | branched-chain amino acid ABC transporter permease | - |
| GFD27_RS22175 () | 71876..72763 | - | 888 | WP_003501331.1 | branched-chain amino acid ABC transporter permease | - |
| GFD27_RS22180 () | 72773..73492 | - | 720 | WP_003501328.1 | High-affinity branched-chain amino acid transport ATP-binding protein LivF | VF |
| GFD27_RS22185 () | 73485..74270 | - | 786 | WP_003501326.1 | ABC transporter ATP-binding protein | - |
| GFD27_RS22190 () | 74330..75124 | - | 795 | WP_003501325.1 | enoyl-CoA hydratase/isomerase family protein | - |
| GFD27_RS22195 () | 75149..76354 | - | 1206 | WP_077549922.1 | 3-oxoadipyl-CoA thiolase | - |
| GFD27_RS22200 () | 76408..77952 | - | 1545 | WP_003501321.1 | 3-hydroxyadipyl-CoA dehydrogenase | VF |
| GFD27_RS22205 () | 77949..78953 | - | 1005 | WP_035243811.1 | Phthiocerol synthesis polyketide synthase type I PpsC | VF |
| GFD27_RS22210 () | 78946..80061 | - | 1116 | WP_077549921.1 | CoA transferase | - |
| GFD27_RS22215 () | 80085..80855 | - | 771 | WP_077549920.1 | enoyl-CoA hydratase/isomerase family protein | - |
| GFD27_RS22220 () | 80879..82027 | - | 1149 | WP_003501307.1 | Acyl-CoA dehydrogenase | VF |
| GFD27_RS22225 () | 82059..83240 | - | 1182 | WP_172977949.1 | acyl-CoA dehydrogenase family protein | - |
| GFD27_RS22230 () | 83307..84506 | - | 1200 | WP_077549918.1 | ABC transporter substrate-binding protein | - |
| GFD27_RS22235 () | 84823..86820 | + | 1998 | WP_077549917.1 | FAD-dependent oxidoreductase | - |
| GFD27_RS22240 () | 86910..88553 | + | 1644 | WP_077549916.1 | AMP-binding protein | - |
| GFD27_RS22245 () | 88576..89343 | + | 768 | WP_003501297.1 | Dihydroanticapsin 7-dehydrogenase | VF |
| GFD27_RS22250 () | 89354..90124 | + | 771 | WP_003501296.1 | enoyl-CoA hydratase/isomerase family protein | - |
| GFD27_RS22255 () | 90168..90983 | + | 816 | WP_003501295.1 | alpha/beta hydrolase | - |
| GFD27_RS22260 () | 91212..91697 | + | 486 | WP_035243805.1 | MarR family transcriptional regulator | - |
| GFD27_RS22265 () | 91719..92517 | - | 799 | Protein_92 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| GFD27_RS22270 () | 93038..94354 | - | 1317 | WP_077549915.1 | IncP-type conjugal transfer protein TrbI | - |
| GFD27_RS22275 () | 94366..94839 | - | 474 | WP_035243671.1 | conjugal transfer protein TrbH | - |
| GFD27_RS22280 () | 94839..95693 | - | 855 | WP_035243803.1 | hypothetical protein | VF |
| GFD27_RS22285 () | 95711..96388 | - | 678 | WP_003501288.1 | conjugal transfer protein TrbF | - |
| GFD27_RS22290 () | 96406..97602 | - | 1197 | WP_077549914.1 | P-type conjugative transfer protein TrbL | - |
| GFD27_RS22295 () | 97596..97826 | - | 231 | WP_003501277.1 | entry exclusion protein TrbK | - |
| GFD27_RS22300 () | 97823..98632 | - | 810 | WP_035243669.1 | P-type conjugative transfer protein TrbJ | - |
| GFD27_RS22305 () | 98604..101072 | - | 2469 | WP_003501273.1 | conjugal transfer protein TrbE | - |
| GFD27_RS22310 () | 101082..101381 | - | 300 | WP_003501271.1 | conjugal transfer protein TrbD | - |
| GFD27_RS22315 () | 101374..101778 | - | 405 | WP_077549913.1 | conjugal transfer pilin TrbC | - |
| GFD27_RS22320 () | 101768..102739 | - | 972 | WP_003501268.1 | Type IV secretion system protein VirB11 | VF |
| GFD27_RS22325 () | 102736..103371 | - | 636 | WP_077549912.1 | Acyl-homoserine-lactone synthase | VF |
| GFD27_RS22330 () | 103747..104937 | + | 1191 | WP_077549911.1 | hypothetical protein | VF |
| GFD27_RS22335 () | 105022..106017 | + | 996 | WP_077549910.1 | plasmid partitioning protein RepB | - |
| GFD27_RS22340 () | 106174..107418 | + | 1245 | WP_077549909.1 | replication initiation protein RepC | - |
| GFD27_RS22345 () | 107665..108588 | + | 924 | WP_077549924.1 | hypothetical protein | - |
| GFD27_RS22350 () | 108703..108873 | - | 171 | WP_172977950.1 | hypothetical protein | - |
| GFD27_RS22355 () | 109057..110286 | + | 1230 | WP_139346393.1 | hypothetical protein | - |
| GFD27_RS22360 () | 110554..111702 | - | 1149 | WP_077549907.1 | site-specific integrase | - |
| GFD27_RS22365 () | 111896..113074 | + | 1179 | WP_077549906.1 | DUF1612 and helix-turn-helix domain-containing protein | - |
| GFD27_RS22370 () | 113258..114133 | + | 876 | WP_077549905.1 | hypothetical protein | - |
| GFD27_RS22375 () | 114775..117480 | + | 2706 | Protein_114 | Tn3 family transposase TnpA_ISAzs17 | Transposase |
| GFD27_RS22380 () | 117557..118339 | - | 783 | WP_077548331.1 | Bicarbonate transport ATP-binding protein CmpC | VF |
| GFD27_RS22385 () | 118336..119109 | - | 774 | WP_077548332.1 | ABC transporter permease | - |
| GFD27_RS22390 () | 119161..120105 | - | 945 | WP_077548333.1 | ABC transporter substrate-binding protein | - |
| GFD27_RS22395 () | 120128..120772 | - | 645 | WP_077548334.1 | HutD family protein | - |
| GFD27_RS22400 () | 120776..122461 | - | 1686 | WP_077548335.1 | urocanate hydratase | - |
| GFD27_RS22405 () | 122458..123273 | - | 816 | WP_077548336.1 | N-formylglutamate deformylase | - |
| GFD27_RS22410 () | 123270..124811 | - | 1542 | WP_077548337.1 | histidine ammonia-lyase | - |
| GFD27_RS22415 () | 124808..126064 | - | 1257 | WP_077548338.1 | imidazolonepropionase | - |
| GFD27_RS22420 () | 126177..127523 | + | 1347 | WP_077548339.1 | formimidoylglutamate deiminase | - |
| GFD27_RS22425 () | 127615..128334 | + | 720 | WP_077548606.1 | histidine utilization repressor | - |
| GFD27_RS22430 () | 128396..128599 | - | 204 | WP_077548340.1 | hypothetical protein | - |
| GFD27_RS22435 () | 128927..130342 | + | 1416 | WP_077548341.1 | argininosuccinate lyase | - |
| GFD27_RS22440 () | 130339..131214 | + | 876 | WP_077548342.1 | amino acid ABC transporter permease | - |
| GFD27_RS22445 () | 131244..131999 | + | 756 | WP_172977952.1 | L-cystine import ATP-binding protein TcyC | VF |
| GFD27_RS22450 () | 132034..132870 | + | 837 | WP_077548344.1 | ABC transporter substrate-binding protein | - |
| GFD27_RS22455 () | 132925..133818 | - | 894 | WP_077548345.1 | LysR family transcriptional regulator | - |
| GFD27_RS22460 () | 134001..134231 | + | 231 | WP_077548346.1 | antitoxin | Antitoxin Detail |
| GFD27_RS22465 () | 134231..134632 | + | 402 | WP_077548347.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| GFD27_RS22470 () | 135360..136940 | + | 1581 | WP_077548607.1 | ISL3 family transposase ISRsp8 | Transposase |
| GFD27_RS22475 () | 137344..137736 | + | 393 | Protein_134 | transposase | - |
| GFD27_RS22480 () | 138014..138742 | + | 729 | WP_036588740.1 | FadR family transcriptional regulator | - |
| GFD27_RS22485 () | 138924..139082 | + | 159 | WP_172977951.1 | hypothetical protein | - |
| GFD27_RS22490 () | 139576..140007 | - | 432 | WP_036588654.1 | heme-binding protein | - |
| GFD27_RS22495 () | 140012..140904 | - | 893 | Protein_138 | hypothetical protein | - |
| GFD27_RS22500 () | 140971..142248 | - | 1278 | WP_077548349.1 | glycolate oxidase subunit GlcF | - |
| GFD27_RS22505 () | 142250..143398 | - | 1149 | WP_077548350.1 | FAD-binding protein | - |
| GFD27_RS22510 () | 143395..144849 | - | 1455 | WP_036588744.1 | FAD-binding protein | - |
| GFD27_RS22515 () | 145105..146322 | - | 1218 | WP_036588661.1 | CoA transferase | - |
| GFD27_RS22520 () | 146572..147690 | + | 1119 | WP_051517875.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| GFD27_RS22525 () | 147906..149249 | + | 1344 | WP_077548351.1 | extracellular solute-binding protein | - |
| GFD27_RS22530 () | 149305..150177 | + | 873 | WP_036588662.1 | sugar ABC transporter permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|